1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACTgtgagtctcatgctcaacattcatgtctttttgctccagatgaaacacaaggttcaaggagcataacttttttactaaaaactaaaccgcagttccaattcag
species | Arabidopsis thaliana |
transcript | AT1G72420.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACT ATATATACTGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGACAACTCAEST: gi|116420282|gb|EG462874.1|EG462874
genomic: ATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACTgtgagtctca ... tccaattcagATATATACTGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGACAACTCA
EST: ATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACT ATATATACTGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGACAACTCAEST: gi|86065274|gb|DR361031.1|DR361031
genomic: ATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACTgtgagtctca ... tccaattcagATATATACTGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGACAACTCA
EST: ATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACT ATATATACTGAGAACTGGGTGAACTCGCCAGGACEST: gi|152038463|gb|AV823677.2|AV823677
genomic: ATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACTgtgagtctca ... tccaattcagATATATACTGAGAACTGGGTGAACTCGCCAGGAC
EST: ATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACT ATATATACTGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGACAACTCA
genomic: ATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACTgtgagtctca ... tccaattcagATATATACTGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGACAACTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCCTGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACTgtgagtctcatgctcaacattcatgtctttttgctccagatgaaacacaaggttcaaggagcataacttttttactaaaaactaaaccgcagttccaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG