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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGCACAATATTGCTTAACAAGTACCATCATGCTTTCTCTGACAACTGATGATGAGTCTTCGGGCAAATTCGGCTTATCTGGATCAATTAGAAGACAAgtaagtattagcttctatttagcccatgccttcatagataaatagttcctggtatgaattgtgattcaatggaggaaaaccaaatatctgtaaaagaataacattattctgctactgttgaaattag

Basic information

species Arabidopsis thaliana
transcript AT1G71790.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19799063|gb|AU230353.1|AU230353
EST:     ATGATGAGTCTTCGGCCAAATTCGGCTTATCTGGATCAATTAGAAGACAA                         ATGAAAATGGAGCTACCAGTAGCTGACGGACACCTGTCCAATATGGGGAGA
genomic: ATGATGAGTCTTCGGGCAAATTCGGCTTATCTGGATCAATTAGAAGACAAgtaagtatta ... ttgaaattagATGAAAATGGAGCTAGCAGTAGCTGACGGACACCTGTGCAATATGGGGAGA
EST: gi|19878249|gb|AU239080.1|AU239080
EST:     ATGATGAGTCTTCGGGCAAATTCGGCTTATCTGGATCAATTAGAAGACAA                         ATGAAAATGGAGCTAGCAGTAGCTGACGGACACCTGTGCAATATGGGGAGA
genomic: ATGATGAGTCTTCGGGCAAATTCGGCTTATCTGGATCAATTAGAAGACAAgtaagtatta ... ttgaaattagATGAAAATGGAGCTAGCAGTAGCTGACGGACACCTGTGCAATATGGGGAGA