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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCGAATTTTTTCCGAAGTGACGCTAGGTTACGTGCTCTCCGCTTCCTTGATCATTTGCTTgtacgtgtatatgcttccaataattgtttcagacagactgttcttagaagtcttagatgatggaaaatgtatctccacatttgataaccttttcggaacaattttctctttatccag

Basic information

species Arabidopsis thaliana
transcript AT1G71410.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 6
GATCGAATTTTTTCCGAAGTGACGCTAGGTTACGTGCTCTCCGCTTCCTTGATCATTTGCTTgtacgtgtatatgcttccaataattgtttcagacagactgttcttagaagtcttagatgatggaaaatgtat-ctccacatttgataaccttttcggaacaattttctctttatccag
| ||    |||||  |   |||| ||||||| |||||||| ||||||||||||||  |||||||| |                 ||| ||| ||     |   | |||| | |   | ||| |  || ||| |   |  | | ||||    |||   |      |  ||  ||  | |||
GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaag-----------------atttttttagtttagcc--ttttagcattacaaaatg-tataacatgcaaattttagagttgaagttcttgatgatgtg-tcctcctttccttcag

upper sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 6
GATCGAATTTTTTCCGAAGTGACGCTAGGTTACGTGCTCTCCGCTTCCTTGATCATTTGCTTgtacgtgtatatgcttccaataattgtttcagacagactgttcttagaagtcttagatgatggaaaatgtatctccacatttgataaccttttcggaacaattttctctttatccag
| ||    |||||  |   |||| ||||||| |||||||| ||||||||||||||  |||||||| |     ||  ||| | |       | || |       | |||| | |   | ||| |   |     || |  | | ||||    |||   |      | |||  ||  | |||
GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaag-----atttttctagt-------ttagcc-------ttttagcattacgaaatgttaacatgcaaatttt-agagttgaagttcttgatgatgtg-tcttcctttccttcag