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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGGTCAGAAAGACGGAgtaatgaaccttaactcgcttgttcctttatctaaagtttttgtacatggatatatgagccatttcatttggttttatcataaatcggttcatatcaatt...

Basic information

species Arabidopsis thaliana
transcript AT1G70580.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70580.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G03260.3 (Glycine max), 5'ss of exon 6
CGATCCAGAACTCATATTTCTAACTGATGGAGCGAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGGTCAGAAAGACGGAgtaatgaaccttaactcgcttgttcctttatctaaagtttttgtacatggatatatgagccatt--tcatttggttttatcataaatcggttcatatcaatt
 |||||||||||||||| ||| |||||||| || ||||| || |||||||| || || |||  | ||||  | |||||  | || || |||||  |  ||   |  ||||||  |    |     | | | | ||  |  ||   |   |||   ||     | ||||    |                 
TGATCCAGAACTCATATATCTCACTGATGGTGCCAGCAAGGGGGTGATGCAGATATTAAATACTATCATCAGAGGTCAAGACGATGGGgtaatataattt--ttttcttgttagtactgcagttttctatattcagtgtcattgaaagaattgcccaacacttcttattgccag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124811436|gb|EH896302.1|EH896302
EST:     TCATACGCGGTCAGAAAGACGGA                         ATTCTGGTTCCAGTTCCACAGTATCCACTCTACTCGGCTACTATATCTCTG
genomic: TCATACGCGGTCAGAAAGACGGAgtaatgaacc ... tggttggcagATTCTGGTTCCAGTTCCACAGTATCCACTCTACTCGGCTACTATATCTCTG