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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGgtaattactaactcattaatcttgatttagcctgagttgtgaatcaagattgttcgatatatgactttcttgtgggataagtttgagtctttgagatgataagattaatcgatctctaacacgatggaaatcctctaaacaatggcag

Basic information

species Arabidopsis thaliana
transcript AT1G70410.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152037774|gb|BP796793.2|BP796793
EST:     GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG                         TGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGAT
genomic: GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGgtaattacta ... acaatggcagTGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGAT
EST: gi|124823965|gb|EH908831.1|EH908831
EST:     ATGCTGCCCCAACTCAAAG                         TGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGAT
genomic: ATGCTGCCCCAACTCAAAGgtaattacta ... acaatggcagTGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGAT
EST: gi|86080525|gb|DR376282.1|DR376282
EST:     GTATTAA-GGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG                         TGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGWT
genomic: GTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGgtaattacta ... acaatggcagTGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGAT
EST: gi|86080573|gb|DR376330.1|DR376330
EST:     GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG                         TGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGAT
genomic: GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGgtaattacta ... acaatggcagTGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGAT
EST: gi|125002029|gb|EL074298.1|EL074298
EST:     GGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG                         TGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAG
genomic: GGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGgtaattacta ... acaatggcagTGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAG
EST: gi|125265650|gb|EL279735.1|EL279735
EST:     GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG                         TGACTTCATTG
genomic: GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGgtaattacta ... acaatggcagTGACTTCATTG
EST: gi|86078926|gb|DR374683.1|DR374683
EST:     GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG                         TGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGAT
genomic: GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGgtaattacta ... acaatggcagTGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGAT
EST: gi|164118143|gb|ES165594.1|ES165594
EST:     GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG                         TGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAG
genomic: GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGgtaattacta ... acaatggcagTGACTTCATTGAAAATTGGGTGAAGATAGGCGCATCAGCGAG
EST: gi|125298182|gb|EL312267.1|EL312267
EST:     GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG                         TGACTTCATTGAAAATTTGGGTGAA
genomic: GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGgtaattacta ... acaatggcagTGACTTCATTGAAAATT-GGGTGAA
EST: gi|152034513|gb|BP830524.2|BP830524
EST:     GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAG                         TGACTTCACTTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGA
genomic: GGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGgtaattacta ... acaatggcagTGACTTCA-TTGAAAATTGGGTGAAGATAGGCGCATCAGCGAGGAACAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGACTCATGTCCATTGAAGATGATGCTGCCCCAACTCAAAGgtaattactaactcattaatcttgatttagcctgagttgtgaatcaagattgttcgatatatgactttcttgtgggataagtttgagtctttgagatgataagattaatcgatctctaacacgatggaaatcctctaaacaatggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC