1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGGTAAATCGACAACATGTGTTGCTTTCATCCTTGCAATGTACAAAGCTGCTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTgtgagtttctttttttttcttttcaatatcaaatctttccattaacattactcatgaacgtttatcttctttcgtattttcag
species | Arabidopsis thaliana |
transcript | AT1G70160.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACT ATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTAEST: gi|116428911|gb|EG471503.1|EG471503
genomic: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTgtgagtttct ... gtattttcagATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTA
EST: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACT ATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTEST: gi|86063791|gb|DR359548.1|DR359548
genomic: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTgtgagtttct ... gtattttcagATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTT
EST: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACT ATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTAEST: gi|47828742|gb|CK118426.1|CK118426
genomic: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTgtgagtttct ... gtattttcagATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTA
EST: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACT ATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTAEST: gi|163970931|gb|ES099523.1|ES099523
genomic: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTgtgagtttct ... gtattttcagATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTA
EST: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACT ATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGAEST: gi|116428910|gb|EG471502.1|EG471502
genomic: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTgtgagtttct ... gtattttcagATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGA
EST: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACT ATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTEST: gi|47831564|gb|CK121248.1|CK121248
genomic: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTgtgagtttct ... gtattttcagATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTT
EST: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACT ATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTA
genomic: CTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTgtgagtttct ... gtattttcagATCCGAGATGCGTACACTCTGAAGTTATTTGAGTCTAACCAGACTCGGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTAAATCGACAACATGTGTTGCTTTCATCCTTGCAATGTACAAAGCTGCTGGTATATTCGACCCTCTCGCTGATCACATTCAAGTCACTGAATTCACTgtgagtttctttttttttcttttcaatatcaaatctttccattaacattactcatgaacgtttatcttctttcgtattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT