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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGAGCAGACTGAGCCTGCTACTTACAACAATGCACCACTCCTTGGTGTTCTTGCTCGTCTCAGCAGTGGTCATTCCGGTTATAGCCAGTTTCTTCCAGgtttgagtctgatattctaaaccattccaatgtcattgaggagaagtttgaaactcaaagtagtttacttatcttgttgttggttcactgcag

Basic information

species Arabidopsis thaliana
transcript AT1G64390.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116471725|gb|EG514317.1|EG514317
EST:     TCTTGCTCGTCTCAGCAGTGGTCATTCCGGTTATAGCCAGTTTCTTCCAG                         TGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTCGTAGACCGAAAG
genomic: TCTTGCTCGTCTCAGCAGTGGTCATTCCGGTTATAGCCAGTTTCTTCCAGgtttgagtct ... ttcactgcagTGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTCGTAGACCGAAAG
EST: gi|47829907|gb|CK119591.1|CK119591
EST:     TCTTGCTCGTCTCAGCAGTGGTCATTCCGGTTATAGCCAGTTTCTTCCAG                         TGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTCGTAGACCGAAAG
genomic: TCTTGCTCGTCTCAGCAGTGGTCATTCCGGTTATAGCCAGTTTCTTCCAGgtttgagtct ... ttcactgcagTGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTCGTAGACCGAAAG
EST: gi|116445057|gb|EG487649.1|EG487649
EST:     TCTTGCTCGTCTCAGCAGTGGTCATTCCGGTTATAGCCAGTTTCTTCCAG                         TGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTCGTAGACCGAAAG
genomic: TCTTGCTCGTCTCAGCAGTGGTCATTCCGGTTATAGCCAGTTTCTTCCAGgtttgagtct ... ttcactgcagTGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTCGTAGACCGAAAG