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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAAGACACGGGGATAAGCTTTACTTGTGACCTCAATGACAACATTCCCGCTCCGTGGCCTTCATCTTCTCTATCCTCAGCCTCTACCTGTAAAAAACgtgcgtggtttatcgtatttatcttcttgatttccgacatttttgcctctctttttttcttaacttgcatacgtttttctgtattgttcttttgcagctgttag

Basic information

species Arabidopsis thaliana
transcript AT1G61900.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G61900.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv10s0116g01850.t01 (Vitis vinifera), 5'ss of exon 6
GATAAAGACACGGGGATAAGCTTTACTTGTGACCTCAATGACAACATTCCCGCTCCGTGGCCTTCATCTTCTCTATCCTCAGCCTCTACCTGTAAAAAACgtgcg--tggtttatcgtatttatcttcttgatttccgacatttttgcctctctttttttcttaacttgca-tacgtttttctgta---------ttgttcttttgcagctgttag---------------------------------------
|| ||     | |||||||| || | |||||| || |||||||||||||| ||||| |||||||| || |||| ||   |||| ||  | || || ||| ||  |  |  | | |    ||| |    ||   |   |    | |||   |  ||| ||   | |     | |||  ||| ||  |         |  ||| ||     |||| |                                        
GACAAGTCTTCAGGGATAAGTTTCATTTGTGATCTGAATGACAACATTCCAGCTCCTTGGCCTTCTTCATCTCAATTACCAGCTTCATCATGCAATAAAAgtatggcttatctgtaacttttgttcgtttagatgaggttcctgttgttaccttttcttctatgagcaaaactactctttgctaaagaaagtgattatttccttctttcctgtcacatttcttcttgatttatgtctgaacttgttgaattgcag