Sequence
atgc intronic sequence ATGC exonic sequenceGGTTGGTTCTTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGgtttgtttcttaagtctatttcaaatgttgcttgttcttctgtaagagaccttaaatgcatattaacaggcttaagagtttggttttattttgttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G61250.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G61250.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G041181_T01 (Zea mays), 5'ss of exon 7
GGTTGGTTCTTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGgtttgtttcttaagtctatttcaaatgttgcttgttcttctgtaagagaccttaaatgcatattaacaggcttaagagtttggttttattttgttcag
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GGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatact----gaatcatttt--ggtgttatttgttgttctatcaa-----ttatat-cgtgctcaca--ctttaaa--ttgtatcaaccgttttcag
upper sequence: AT1G61250.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G448715_T02 (Zea mays), 5'ss of exon 7
GGTTGGTTCTTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGgtttgtttcttaagtctatttcaaatgttgcttgttcttctgtaagag-accttaaatgcatattaacaggcttaagagtttggttttattttgttcag
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GGTTGGTTTGCTGCCTCTTCTGGAATGTCATAGCAGTTACTACAGCTTGGATCAAGGGGGAAGgtatact-----gattcattttga-tgttatttgtggttctataaaattgtcccaggctcacatt-------ttcaaaatt--gtattaaccatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125243256|gb|EL257341.1|EL257341EST: TCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAG GAGTGACGATATGG
genomic: TCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGgtttgtttct ... ttttgttcagGAGTGACGATATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTGGTTCTTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGgtttgtttcttaagtctatttcaaatgttgcttgttcttctgtaagagaccttaaatgcatattaacaggcttaagagtttggttttattttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA