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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGGTAAAGACAGTACCAAAGCCTGTGTCTCCAACATAACAGTCCGAGATGTCGTTATGCACAACACAATGACCGGTGTCCGGATCAAGACTTGGCAGgtaatgattaacactttcataaaaaaaacgaatgagtgatttggtttggaagctcatgaaacttaacagcttcaatgtgaatacag

Basic information

species Arabidopsis thaliana
transcript AT1G60590.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G60590.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA18G19670.1 (Glycine max), 5'ss of exon 6
CCTTGGTAAAGACAGTACCAAAGCCTGTGTCTCCAACATAACAGTCCGAGATGTCGTTATGCACAACACAATGACCGGTGTCCGGATCAAGACTTGGCAGgtaa----tgattaacac------tttcataaaaaaaacgaatgagtgatttggtttggaagctcatgaaacttaacagcttcaatgtgaatacag-----
 || || || || |  |||| |||||||||||||||||| || ||| | ||||||   ||||||||||||||||  |||||| | ||||| || ||||||||||    ||| |||  |      ||||  ||   | | ||   ||| || || |||   || | |  | |        ||||||  | | |  |      
TCTAGGAAAGGATAACACCAGAGCCTGTGTCTCCAACATTACTGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatgagtaatgcaatgtctttcccaagttacaagataaagt-atatgttttacgagttaaccagaaaatttgacttcaaaatcagtttataccat

upper sequence: AT1G60590.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G39340.2 (Glycine max), 5'ss of exon 5
CCTTGGTAAAGACAGTACCAAAGCCTGTGTCTCCAACATAACAGTCCGAGATGTCGTTATGCACAACACAATGACCGGTGTCCGGATCAAGACTTGGCAGgtaa----tgattaacac------tttcataaaaaaaacgaatgagtgatttggtttggaagctcatgaaacttaacagcttcaatgtgaatacag-----
 || || || || |  |||| |||||||||||| ||||| || ||| | ||||||   ||||||||||||||||  |||||| | ||||| || ||||||||||    ||| |||  |      ||||  ||   | | ||   ||| |  || ||    || | |  | |        ||||||  | | |         
TCTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACTGTCAGGGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGgtaaaatatgagtaatgcaatgtctttcccaagttacatgatgaagt-acatgtttcacgagttaaccagaaaatttgacttcaaaatcagtttgttgtta

upper sequence: AT1G60590.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv01s0127g00400.t01 (Vitis vinifera), 5'ss of exon 7
CCTTGGTAAAGACAGTACCAAAGCCTGTGTCTCCAACATAACAGTCCGAGATGTCGTTATGCACAACACAATGACCGGTGTCCGGATCAAGACTTGGCAGgtaatgattaacactttcataaaaaaaacgaatgagtgatttgg------tttggaagctcatgaaacttaacagcttcaatgtgaatacag---------
 ||||| |  ||  | ||||||||||||||||||||||| || ||||||||  || |||||||||||||||||| ||||||| |||||||||| |||||||||| |  ||  | | | |   || ||||      |||   | |      |||       ||  |  |  | ||  || ||| | || | ||         
ACTTGGAAGGGATGGCACCAAAGCCTGTGTCTCCAACATTACGGTCCGAGACATCATTATGCACAACACAATGAACGGTGTCAGGATCAAGACATGGCAGgtaa-gcctactattattactcaagaaacaggatcgtgtactagctgaattttaagtagacacaagccacagcattttaaatattaaaatagttttcactt