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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTTCAAACGATAATGAGCATCGAAGAAAATGGTGGCCTACGAGTCCTTGCAATCAATATCTTAGGAAAATTCTTGTCCAACCGAGATAATAACATCAGgtttttatcgagtaccaccatatttgagtttttttttgtaactaatctctgagatcttattattcatctacaataatcttccaaatttagtttgctataa...

Basic information

species Arabidopsis thaliana
transcript AT1G60070.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G60070.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os06g07090.1 (Oryza sativa), 5'ss of exon 6
GCGTTCAAACGATAATGAGCATCGAAGAAAATGGTGGCCTACGAGTCCTTGCAATCAATATCTTAGGAAAATTCTTGTCCAACCGAGATAATAACATCAGgtt-tttatcgagtaccaccatatttgagtttttttttgtaactaatctctgagatcttattattcatctacaataatcttccaaatttagtttgctataa-
| ||| | || |||||| |||||||||  | | ||||  |||| || || |||||||||||||| || | |||  |||||||||| ||||||||||||||||  || |     | |      |     | | ||         |||  | || ||    |   || |   |  | ||  || | | || | |||  | ||| 
GTGTTGAGACTATAATGGGCATCGAAGCTACTAGTGGTTTACGTGTGCTGGCAATCAATATCTTGGGTAGATTTCTGTCCAACCGTGATAATAACATCAGgtaattcactcttttctcttggacaactgatgttcaagcctcttaacttttgtgaataaagggtttaa--agtaaaagtttgctagttaattttcttgtaat

upper sequence: AT1G60070.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G03800.1 (Glycine max), 5'ss of exon 5
GCGTTCAAACGATAATGAGCATCGAAGAAAATGGTGGCCTACGAGTCCTTGCAATCAATATCTTAGGAAAATTCTTGTCCAACCGAGATAATAACATCAGgtttttatcgagt-accaccatatttgagtttttttttgtaactaatctctgagatcttattattcatctacaataatcttccaaatt-tagtttgctataa
| |||||||| ||||||||||| ||||| ||||||||| |||| || ||||| || |||||| | |||| ||||||||| ||||| || || || ||||||||| | ||  || |   |     ||   |   |   || || |  |   | ||| ||  | |  |    ||| | | | | || |||  |   | | |   
GTGTTCAAACAATAATGAGCATTGAAGATAATGGTGGCTTACGTGTACTTGCCATTAATATCCTGGGAAGATTCTTGTCAAACCGTGACAACAATATCAGgtttatttctggtcattgcttctctttcataagtaactgaaagttttgattaagacctactaacaccagcacattgagcgttcacattgcaaagttccac--

upper sequence: AT1G60070.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G39930.1 (Glycine max), 5'ss of exon 6
GCGTTCAAACGATAATGAGCATCGAAGAAAATGGTGGCCTACGAGTCCTTGCAATCAATATCTTAGGAAAATTCTTGTCCAACCGAGATAATAACATCAGgt-ttttatcgagtaccaccatatttga---gtttttttttgta-actaatctctgagatcttattattcatctacaataatcttccaaatttagtttgctataa
| |||||||| ||||||||  | ||||| ||||||||| |||| || ||||||||||||||| |||||| |||||||||  ||  ||| || || |||||||  ||||| |   |  |  || |  |    |||| | ||| || |  | | | | || |  |  || |  | ||  || || |      |  ||   |      
GTGTTCAAACAATAATGAGTGTTGAAGATAATGGTGGCTTACGCGTGCTTGCAATCAATATCCTAGGAAGATTCTTGTCGCACAAAGACAACAATATCAGgtactttattggaaaata--atgtccggactgtttctatttctatatcagtttttaaggtaatcatagttgtatagtatcatatattttgtaaagagagagg---

upper sequence: AT1G60070.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G03890.1 (Glycine max), 5'ss of exon 6
GCGTTCAAACGATAATGAGCATCGAAGAAAATGGTGGCCTACGAGTCCTTGCAATCAATATCTTAGGAAAATTCTTGTCCAACCGAGATAATAACATCAGgtttttatcgagtaccaccatatttgagtttttttttgtaactaatctctg----agatcttattattcatctacaataatcttccaaatt-tagtttgctataa
| |||||||| ||||||||||| ||||| ||||||||| |||| || ||||| || |||||| | |||| ||| ||||| || || || || || ||||||||| | ||  ||     |||   |    |||  |   ||||| |  | ||    ||| ||  | |  |    ||  | |   | || |||  |   | | |  |
GTGTTCAAACAATAATGAGCATTGAAGATAATGGTGGCTTACGTGTACTTGCCATTAATATCCTGGGAAGATTTTTGTCAAATCGTGACAACAATATCAGgtttatttctggt-----catggcttctctttcataaataactgaattttgattaagacctactaacacgagcacgttgagtgttcacattgcaaagttccacta

upper sequence: AT1G60070.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 6
GCGTTCAAACGATAATGAGCATCGAAGAAAATGGTGGCCTACGAGTCCTTGCAATCAATATCTTAGGAAAATTCTTGTCCAACCGAGATAATAACATCAGgtttttatcgagtaccacc-atatttgagtttttttttgtaactaatctctgagatcttattattcatctacaataatcttccaaatttagtttgctataa-
| ||| |||| || |||||||| ||||| | | ||||| |||| || ||||| ||||||||||| |||| ||||||||| || || || || || |||||||   | |  | ||      || || |||||     | |  |  ||| | ||   |||  |||||  | |  | ||   | | || ||    ||   ||   
GTGTTGAAACTATTATGAGCATTGAAGATACTAGTGGCTTACGTGTGCTTGCCATCAATATCTTGGGAAGATTCTTGTCAAATCGTGACAACAATATCAGgtaaattttcattattttttattttggagttcaacctaggcatgaatatatg--gtctatttatttttgttgattagattcctaagttgctattatcattgg