1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TAGAGCTGGGCAATATGGAACTGTGACCAGTCTATACACCGAGGCTAACCGTGATTTAGTAGAGGCAATCCGTGAAGCAGTGAAGATGGGTCAGCCAGTGgtataaattctatcaaagatcttaatgtagtttaatccgctgcatactcaagcgcaatattattagctcatgaacattagcatattccttctgatgattcattcttgtgttatgttgtatgaaatattcag
species | Arabidopsis thaliana |
transcript | AT1G59990.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGATTTAGTAGAGGCAATCCGTGAAGCAGTGAAGATGGGTCAGCCAGTG GAAACTGCATTCAGCAGGAEST: gi|124727357|gb|EH818759.1|EH818759
genomic: GTGATTTAGTAGAGGCAATCCGTGAAGCAGTGAAGATGGGTCAGCCAGTGgtataaattc ... aaatattcagGAAACTGCATTCAGCAGGA
EST: GCAATCCGTGAAGCAGTGAAGATGGGTCAGCCAGTG GAAACTGCATTCAGCAGGAAGAGAGGTTTTAGGAACAAGGTTAAGAAGAGEST: gi|125163118|gb|EL189888.1|EL189888
genomic: GCAATCCGTGAAGCAGTGAAGATGGGTCAGCCAGTGgtataaattc ... aaatattcagGAAACTGCATTCAGCAGGAAGAGAGGTTTTAGGAACAAGGTTAAGAAGAG
EST: AAGCAGTGAAGATGGGTCAGCCAGTG GAAACTGCATTCAGCAGGAAGAGAGGTTTTAGGAACAAGGTTAAGAAGAGA
genomic: AAGCAGTGAAGATGGGTCAGCCAGTGgtataaattc ... aaatattcagGAAACTGCATTCAGCAGGAAGAGAGGTTTTAGGAACAAGGTTAAGAAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAGCTGGGCAATATGGAACTGTGACCAGTCTATACACCGAGGCTAACCGTGATTTAGTAGAGGCAATCCGTGAAGCAGTGAAGATGGGTCAGCCAGTGgtataaattctatcaaagatcttaatgtagtttaatccgctgcatactcaagcgcaatattattagctcatgaacattagcatattccttctgatgattcattcttgtgttatgttgtatgaaatattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG