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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttaggaatccgtatttatattcacctgaaatagagtttgagattctgatagttatggatgtaacagtagtatttattgtaagatttttgtttccctgagataatatctgataagtagtaagtctaagtatatcaatttgacacag

Basic information

species Arabidopsis thaliana
transcript AT1G56340.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064682|gb|DR360439.1|DR360439
EST:     GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG                         AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: gi|116465699|gb|EG508291.1|EG508291
EST:     GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG                         AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: gi|116465718|gb|EG508310.1|EG508310
EST:     GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG                         AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: gi|116465735|gb|EG508327.1|EG508327
EST:     GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG                         AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: gi|125241870|gb|EL255955.1|EL255955
EST:     GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG                         AATTCAAGGATGACCCAG
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAG
EST: gi|116482410|gb|EG525002.1|EG525002
EST:     GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG                         AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
genomic: GAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: gi|125301959|gb|EL316044.1|EL316044
EST:     AGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTG                         AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
genomic: AGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG
EST: gi|125070099|gb|EL135638.1|EL135638
EST:     AAGGCTCCAATGATCGACAACCCTG                         AATTCAAGGATGACCCAGAACTCTATGTCTTCCC-AAATTGAAGTATGTTG
genomic: AAGGCTCCAATGATCGACAACCCTGgtaatttagg ... tttgacacagAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGgtaatttaggaatccgtatttatattcacctgaaatagagtttgagattctgatagttatggatgtaacagtagtatttattgtaagatttttgtttccctgagataatatctgataagtagtaagtctaagtatatcaatttgacacag

- - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - TGGAAG