1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTCGGCCAGACCGTCAAACTTTGTACTGGAGTGCCACTTGGCCTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAAgtaagagagtaagagacatctctctaacgtttctcacagtggtttagttgtcaacaaaaacttatcaggcttctttggtcttaattgcag
species | Arabidopsis thaliana |
transcript | AT1G55150.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAA GTGATAATAGGATCTTCTGATTTGAAAGCTAAACCGTGCAATTCGTCAAATEST: gi|116454669|gb|EG497261.1|EG497261
genomic: CTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAAgtaagagagt ... ttaattgcagGTGATAATAGGATCTTCTGATTTGAAAGCTAA-CCGTGCAATTCGTCAAAT
EST: CTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAA GTGATATTAGGATCTTCTGATTTGAAAGCTAACCGTGCAATTCGTCAAATT
genomic: CTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAAgtaagagagt ... ttaattgcagGTGATAATAGGATCTTCTGATTTGAAAGCTAACCGTGCAATTCGTCAAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCGGCCAGACCGTCAAACTTTGTACTGGAGTGCCACTTGGCCTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAAgtaagagagtaagagacatctctctaacgtttctcacagtggtttagttgtcaacaaaaacttatcaggcttctttggtcttaattgcag
- - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT