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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttcttactagcaactgctttatttgtccgcaaaaaattcaatgatgtcactataagtcgtctga...

Basic information

species Arabidopsis thaliana
transcript AT1G51690.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os06g36770.1 (Oryza sativa), 5'ss of exon 6
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggt-tattcacc-cattggaattcaacttgcttccttcttactagcaactgctttatttgtccgcaaaaaattcaatgatgtc-actataagtcgt-ctga-
||  | || || ||   || || ||| |||||||||||| | |||||||| |||||||||||||| |||||||| || || ||||  || ||||| || |  |||   ||||| |  | ||  |  |    | |  |      ||  |  |||| | | | |  | ||||    | || | |     || |  ||| 
GTTGCAAGTCAAGATGTGAACCTTGTTGCTAGATGTCGACGTGTATATGCACATGCTCATGATTACCATATTAACTCTATATCAACCAATAGgtaagtatgatcattgcattgaatattaatctattaagctgtatcc-----ctaatgcattttttctccatgagttcatctgtatctatttcttttcatgttgaa

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 6
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttcttactagcaactgcttt--atttgtccgcaaaaaattcaatgatgtc--actataagtcgtctga
|| ||| |||| || | || || |||  | ||||| ||  | |||||| | |||||||||||||| ||||||||||| || |||||||| ||||  | ||    ||   |   ||  |  |    ||   |||   |     |  |||  |||  |   |      || | ||    |  ||| | |  | |    
GTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCACATGCTCATGATTACCATATTAATTCCATTTCAAATAATAGgttagctaccttcctgatattatggatatctgatcaggcttgtaattttgtaattttgattcttgttctgttgttttattggctccaaactgttacacat----

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttct---tactagcaactgctttatttg-tccgcaaaaaattcaatgatgtcactataagtcgtctga
|| || | ||| ||  | |||| ||  || || || |||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||   | |     | |    | |   |||||  ||  | |    | | | |  | | |||  |  |     |    ||||   || | | | | |||       
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtc--acttgtatcagtatatgcatttgaatgtaccttagctaatgtttgagtttttcagctat-tgaatttgagtatgaca-

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 6
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgt--aggttattcacccattggaattcaacttgcttccttctta---ctagcaactgctttatttgtccgcaaaaaattcaatgatgtcactataagtcgtctga--
|| || ||||| ||  | || | ||   | || || |||||||||||||||||||| ||||| || ||||| ||||| || |||||||||||||   |   ||  |  |||| ||||  | | |   |     | |    |  || || ||  |||||       ||| ||  |         | ||| |  | ||   
GTTACAAGCCAAGAAACAAGTCTTGCCACAAGTTGCCGAAGAGTATATGCTCATGCACATGACTACCATATAAATTCGATATCAAATAACAGgtcctgcacatatattcatttgaatgtatcatagctaacgttcaaggttttcagctactgaatttggatatggaaattttta-------gttctaaattttttgctt

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G165418_T04 (Zea mays), 5'ss of exon 6
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattc-acccattggaatt---caacttgcttccttcttactagcaactgctttatttgtccgcaaaaaattcaatgatgtcactataagtcgtctga
|| || || |  ||  | | |||||| |||||||||||| | |||| |||||||||||| ||||| ||||| ||||| || |||||||| ||||  || |||  |  ||||| | ||   ||  |        ||    | |||||| ||  ||  || |  |   |  ||  |||    | | | |||  ||   
GTTACCAGTCTAGAAGCAAACCCTGTTGCTAGATGTCGACGTGTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatttgatacattgaattttctcatttcaaggggatccattttgcaacttctccatgggttcatatgcatctctttgag---agtttgagtgttcct-

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttcttactagcaactgctttatttgtccgcaaaaaattcaatgatgtcactataagtcgtctga
||||| ||||||||| | ||    |||||| ||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||   ||     |     ||     |  ||      |||    | | | ||   || || ||   |   |  |    | | ||     | | | |   | 
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaaaccttgagggttcctattttaggctgttcagtgtggaatcttgctttttggttatctttatttgttttaacgtagtgttgatttgaaagt

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G20830.4 (Glycine max), 5'ss of exon 6
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttcttactagcaactgctttatttgtccgcaaaaaattcaatgatgtcactataa-gtcg-tctga----
||||| ||||||||| | ||     ||||| |||| || ||||||||||| |||||||||||||||||||||||||| || |||||||||||||   ||    | ||    |  |||   |      ||  | | |  ||| |   ||  || |  |  |    || | |  | | | | ||  || | | |||    
GTAACCAGCCATGAGACCAGTTTGATGGCTCGATGCCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttga--aacctcgagggttcctataatagtctgttcagtgtcaaat--cttgctttttggttatc--tttatttcttttattgtagtgttgatttgaaagt

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA13G42800.2 (Glycine max), 5'ss of exon 6
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttcttactagc---aactgctttatttgtccgcaaaaaattcaatgatgtcactataagtcgtctga
|||| |||||||||  | |||   || ||  |||| || ||||| ||||| ||||||||||||||||| || ||||| || ||||||||||||||  ||| |   |  ||    |  |  ||||     |||  | |        ||  ||      || |     ||||| ||       |  |  |  | |  
GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagttttc--ttattttgtactttgccatagtctagcaaattttggttgaattgagaaccctctgggtattcagtgtcaatcttgcatatattatt-

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 6
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttcttactagcaactgctttatttg-tccgcaaaa-aattcaatgatgt-cactataagtcgtctga
|||| |||||||||  | ||    || ||| ||||||| ||||| ||||| || |||||||||||||| || ||||| || ||||||||||||||  ||| |   |  ||   ||  |  ||||     |||  | |      | |  | ||| | | ||    |||| || | | | || | | | || |    
GTAAGTAGCCATGAAACCAGTTTAGTTGCTCGATGTCGTAGAGTGTATGCACACGCTCATGATTATCACATCAATTCTATTTCAAATAACAGgtattttagttttc--ttaatatgta-tttgccatagtctagcaaattttggttgaaattggttctcattctaattaaaggctattcagtgtcaatcttgcat

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttcttactagcaa--ctgctt---tatttgtccgcaaaaa--attcaatgatgtcactataagtcgtctga
||| | |||| |||| | ||||  |||||||||||||| ||||| |||||||||||||| || |||||||| ||||| || |||||||| |||| | |     ||||||   | || || |  |     |  |  ||||    ||| ||   ||| ||| | |       ||  | ||   | |   || | | |    
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttccacaacccat---actttaattctcgcatataatg-tagctgttctgtttacatatctgttcaccttgttcatgtattgggtttatcttatgacctt---

upper sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: PP1S10_312V6.1 (Physcomitrella patens), 5'ss of exon 6
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgt--aggttattcacccattggaattcaacttgcttccttcttactagcaactgctttatttgtccgcaaaaaattcaatgatgtcactataagtcgtctga
||    |||  |||| |    | | |||| |||||| |||||||||||||| |||| |||| ||| ||||| ||||| ||||| || |||||||    | ||      | |  |  || |  ||| |   || || | ||  | || |||    |      ||   || | |  | | | | |  ||| ||  |
GTGTGGAGCGCTGAGACAGCGCTTTTGGCAAGATGTAGAAGAGTATATGCTAATGCCCATGCTTACCATATCAATTCCATCTCTAACAACAGgtttgagataggtcttcttctggttttactttgttgtattatt-caagagattgattttgaagcttaataattttttagttct-taagtttttgtcttcgca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163984124|gb|ES173780.1|ES173780
EST:     GTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAG                         CGACGGCGAAACATTTATTTCNGCTGATGATTTG
genomic: GTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttatt ... ttataattagCGACGGCGAAACATTTATTTCTGCTGATGATTTG
EST: gi|86070772|gb|DR366529.1|DR366529
EST:     GTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAG                         CGACGGCGAAACATTTATTTCTGCTGATGATTTGCGAATTAATCTTTGGAA
genomic: GTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttatt ... ttataattagCGACGGCGAAACATTTATTTCTGCTGATGATTTGCGAATTAATCTTTGGAA
EST: gi|86070770|gb|DR366527.1|DR366527
EST:     GTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAG                         CGACGGCGAAACATTTATTTCTGCTGATGATTTGCGAATTAATCTTTGGAA
genomic: GTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttatt ... ttataattagCGACGGCGAAACATTTATTTCTGCTGATGATTTGCGAATTAATCTTTGGAA