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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTAAATATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCAGAGAGTTCAAATGCAAATGATATGgtaatctttgccatacttccctgtttttccgatttggtattgcgttattagtttttaaccaattaacatcaacatcatttggggtttcttacatag

Basic information

species Arabidopsis thaliana
transcript AT1G50460.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G50460.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA11G01820.1 (Glycine max), 5'ss of exon 6
GTGGTAAATATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCAGAGAGTTCAAATGCAAATGATATGgtaatctttgccatacttccctgtttttccgatttggtattgcgttattagtttttaaccaattaacatcaacatcatttggggtttcttacatag
|| || |||||||| |||||||| |||||||||||||| || || ||||| ||||||||||||||||||||||| |||||  ||||| ||||||||  ||| |  ||  |   |  |      |  |     ||| | |  | | | ||   |||     |||    |  |                        
GTTGTCAATATGGAATGGGGAAACTTTTGGTCCTCTCACTTACCAAGAACGTCGTATGACATTGACTTGGATGCTGAGAGCCCAAATCCAAATGATCAGgtgagttt--ctgcatctgatgactcctgttgcttgatttgtcatgactaaaattttggagatttgggtgcag-----------------------

upper sequence: AT1G50460.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G43650.1 (Glycine max), 5'ss of exon 6
GTGGTAAATATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCAGAGAGTTCAAATGCAAATGATATGgtaatctttgccatacttccctgtttttccgatttggtattgcgttattagtttttaaccaattaacatcaacatcatttggggtttcttacatag
|| || |||||||| |||||||| |||||||| ||||| || || ||||| || ||||||||||| |||||||| |||||  | ||| ||||||||  ||| |  || | |||  ||      |  |     ||| | |  | | | ||   |||     |||    |  |                        
GTTGTCAATATGGAATGGGGAAACTTTTGGTCATCTCACTTACCAAGAACATCATATGACATTGATTTGGATGCTGAGAGCCCTAATCCAAATGATCAGgtgaggttcggcat--ttgatgactcctgttgcttgatttgtcatgactaaaattttggagatttgggtgcag-----------------------

upper sequence: AT1G50460.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G02450.1 (Glycine max), 5'ss of exon 6
GTGGTAAATATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCAGAGAGTTCAAATGCAAATGAT-ATGgtaatctttgccatactt---ccctgtttttccgatttggtattgcgttattagtttttaaccaattaacatcaacatcatttggggtttcttacatag
|| ||||||||||| |||||||| |||||||| |||||||| || ||||| || ||||| ||||| || ||  | || ||  | ||| |||||||| | | ||   | |||    | |    ||||||  |  ||||    ||  |   | |    |||  | ||||   ||  |                        
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttaggttctgctgctcatgaatcctgttgctt-gattcaagatgactcaaatcagattttgctaattttgatgtag-----------------------

upper sequence: AT1G50460.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA11G10130.1 (Glycine max), 5'ss of exon 6
GTGGTAAATATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCAGAGAGTTCAAATGCAAATGATATGgtaatctttgccatacttccctgtttttccgatttggtattgcgttattagtttttaaccaattaacatcaacatcatttggggtttcttacatag
|| ||||||||||| |||||||| |||||||| |||||||| || ||||| || ||||| ||||| || ||  | || ||  | ||| ||||||||  ||| |                  ||| |   | |   | ||   |||  | | ||       | | | ||||  ||  |||||   || | |  |||
GTTGTAAATATGGAATGGGGAAACTTTTGGTCATCTCATTTACCAAGAACATCTTATGATATTGATTTAGACTCTGAAAGCCCTAATCCAAATGATCAGgttag-----------------gttctgttgctcacgaatccagttgcttgattcaggatgactcaaatcag-at--tttggaaattttgatgtag

upper sequence: AT1G50460.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S3_571V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGGTAAATATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCAGAGAGTTCAAATGCAAATGA-TATGgtaatctttgccatacttccctgtttttccgatttggt-attgcgt-tattagtttttaaccaattaacatcaacatcatttggggtttcttacatag
||| | |||||||||||||||||||||||||| || ||||||||| | || |     |||      ||||||   ||||||   ||| ||   || || |  || | |    |   |   || || |    || || | ||| | |   || |       |  | | | ||     |   |||  |            
GTGATCAATATGGAGTGGGGAAATTTTTGGTCGTCACATTTGCCTCGGACCTACGTGGACGAGCTATTGGATAACGAGAGTCTGAATCCAGGAGAATACgtaaagcatctaaactatgttctattctgttaatatgtttatttcctgcgttggaacgaggctgaatgatatggcttttggttgcag------------

upper sequence: AT1G50460.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S401_23V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGGTAAATATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTTGGATGCAGAGAGTTCAAATGCAAATGATATGgtaatctttgccatacttc--cctgtttttccgatttggtattgcgttattagtttttaaccaattaacatcaacatcatttggggtttcttacatag
||| | ||||||||||||||||| |||||||| || ||||||||| | || |     ||       ||||||   |||||     || ||   ||    ||||      | | ||      || || | | | |    | || | || |  |  ||    ||      |   |  |   ||  | || |        
GTGATCAATATGGAGTGGGGAAACTTTTGGTCATCACATTTGCCTCGGACCTATGTGGATGAGTTATTGGATAGCGAGAGCCTCCATCCAGGAGAATATgtaaaaacatctaaaccatgatctattctgctgttactat-tttcattgtctgccttgggacagcgcttaatgatgtggcttttgattgcag------