1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGTGGAGGAAGATCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGCCAAGAAAATTTTGAAGCAATTTGCAGGAACTGAGgtgtgtttactttctgattttgcaaatgacactgctctcaaagaatcaatttacattgaactttttatatcccttctcatgtttggttcttctttcatct...
species | Arabidopsis thaliana |
transcript | AT1G48850.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTCCTGGAGCTTTGGCCAAGAAAATTTTGAAGCAATCTGCAGGAACTGAG ATTCTTGCCTATGTCTCGCAAGTTCACCATGTEST: gi|164112924|gb|EL992535.1|EL992535
genomic: CTCCTGGAGCTTTGGCCAAGAAAATTTTGAAGCAATTTGCAGGAACTGAGgtgtgtttac ... gtgtctccagATTCTTGCCTATGTCTCGCAAGTTCACCATGT
EST: CTCCTGGAGCTTTGGCCAAGAAAATTTTGAAGCAATTTGCAGGAACTGAG ATTCTTGCCTATGTCTCGCAAGTTCAEST: gi|125230008|gb|EL244093.1|EL244093
genomic: CTCCTGGAGCTTTGGCCAAGAAAATTTTGAAGCAATTTGCAGGAACTGAGgtgtgtttac ... gtgtctccagATTCTTGCCTATGTCTCGCAAGTTCA
EST: CTTTGGCCAAGAAAATTTTGAAGCAATTTGCAGGAACTGAG ATTCTTGCCTATGTCTCGCAAGTTCACCATGTTAGTACTTCCAGAAGAATT
genomic: CTTTGGCCAAGAAAATTTTGAAGCAATTTGCAGGAACTGAGgtgtgtttac ... gtgtctccagATTCTTGCCTATGTCTCGCAAGTTCACCATGTT-GTACTTCCAGAAGAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGAGGAAGATCTTCAGCTAGAGAGACCATTGGAAGAGTTGCTCCTGGAGCTTTGGCCAAGAAAATTTTGAAGCAATTTGCAGGAACTGAGgtgtgtttactttctgattttgcaaatgacactgctctcaaagaatcaatttacattgaactttttatatcccttctcatgtttggttcttctttcatct
- - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA