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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGATGCCGGTTTTCGACATGGTGGAGACATTTCTGGTTAAGAAACTGAATTTCAAACCCTCTACAGTTCTTCGTTTCATTGTACGAAATGTTTATGTTGgtaagtacgttggcatgtactatatagagtctgcattatcaacttaattaaacaacattcgtgttaaaatataattgaagatctagactttgtcttgcatgattattaatgtattcaagaatatatctgaattagatatttgattaatacttgtaacatttttgtataatgtgtgaggacag

Basic information

species Arabidopsis thaliana
transcript AT1G48640.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48640.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G127342_T01 (Zea mays), 5'ss of exon 6
GCGATGCCGGTTTTCGACATGGTGGAGACATTTCTGGTTAAGAAACTGAATTTCAAACCCTCTACAGTTCTTCGTTTCATTGTACGAAATGTTTATGTTGgtaagtacgttggcatgtactatatagagtctgcattatcaacttaattaaacaacattcgtgttaaaatataattgaagatctagactttgtcttgcatgattattaatgtattcaagaatatatctgaattagatatttgattaatacttgtaacatttttgtataatgtgtgaggacag
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GCGATGCCGGTGTTCGACATGATGGAGACGGTCCTGGTGAAGAAACTGCATTTCCCGCCCGGCCTTGCCCTCCGTCTCATTGCCCGGAGCACCTATGTCGgtaatgtcact--catctatcaagtcg--tctgaaccctcagctgatcttctcttcacagttctcagttctcactctaaaatactgcaaatctctgctaaacaaatcgatg----ctaaactactcgtgcag--------------------------------------------------