Sequence
atgc intronic sequence ATGC exonic sequenceAGAGAGTCCAGGAACAGTGCCTGCTGGACGACTTCCAAGACACAAAGAAGTTATCCTGCTGAATGACCTTATTGATTGCGCTCGTCCTGGGGAAGAAATTgtacgttcatcatatattagccttctagaatacttgcacacatgtatatgatcaatcattcatgttatcttgcattggattttttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G44900.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G44900.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G36680.1 (Glycine max), 5'ss of exon 7
AGAGAGTCCAGGAACAGTGCCTGCTGGACGACTTCCAAGACACAAAGAAGTTATCCTGCTGAATGACCTTATTGATTGCGCTCGTCCTGGGGAAGAAATTgtacgttcatcatatattagccttctagaatacttgcacacatgtatatgatcaatcattcatgttatcttgcattggattttttgcag
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AGAGAGTCCAGGAATAGTCCCTGCGGGTCGACTTCCAAGATACAAGGAAGTGATACTATTGAATGATCTGATTGATTGTGCTCGTCCTGGAGAAGAAATTgtatcatcttt-taccttgactcatta-attttttgcccttgggtgt-tatagaatgattttcttaatc----attttcttattt-cag
upper sequence: AT1G44900.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G03920.1 (Glycine max), 5'ss of exon 7
AGAGAGTCCAGGAACAGTGCCTGCTGGACGACTTCCAAGACACAAAGAAGTTATCCTGCTGAATGACCTTATTGATTGCGCTCGTCCTGGGGAAGAAATTgtacgttcatcatata-ttagccttctagaatacttgcacacatgtatatgatcaatcattcatgttatcttgcattggattttttgcag
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AGAGAGTCCAGGGATAGTTCCTGCAGGTCGACTTCCAAGATACAAGGAAGTGATACTATTAAATGATCTGATTGATTGTGCACGCCCTGGAGAAGAAATTgta---tcatcttttactttgactcatcaattttttggccggcccttagttgttatataatgaccttcttaatcattttcttattt-cagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125203973|gb|EL218927.1|EL218927EST: AATGACCTTATTGATTGCGCTCGTCCTGGGGAAGAAATT GAGGTTACTGGCATATATACCAACAACTTTGACCTATCTTTGAACACAAAG
genomic: AATGACCTTATTGATTGCGCTCGTCCTGGGGAAGAAATTgtacgttcat ... ttttttgcagGAGGTTACTGGCATATATACCAACAACTTTGACCTATCTTTGAACACAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGAGTCCAGGAACAGTGCCTGCTGGACGACTTCCAAGACACAAAGAAGTTATCCTGCTGAATGACCTTATTGATTGCGCTCGTCCTGGGGAAGAAATTgtacgttcatcatatattagccttctagaatacttgcacacatgtatatgatcaatcattcatgttatcttgcattggattttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA