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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCAGTTCAAGCCGACAGGGATGATCCAAACCTCCCCCTAGTAACTGCACCATTTGGACATGCCTCCCAGgtaatagaacaaacacatttcagaatctagactggttaattgtttctcctacttctatcctgtgttttgagttctactgatttttctctatgcctctttttttattag

Basic information

species Arabidopsis thaliana
transcript AT1G43690.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G43690.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G30610.1 (Glycine max), 5'ss of exon 6
GATTCAGTTCAAGCCGACAGGGATGATCCAAACCTCCCCCTAGTAACTGCACCATTTGGACATGCCTCCCAGgta-------atagaacaaacacatttcagaatctagac-------tggttaattgtttctcctacttctatcctgtgttttgagttctactgatt--tttctctatgcctctttttttattag
|| |  ||||||   |||||||||||||| | ||| || || || |||||||| ||||| |||||||||||||||       | |  ||| | | |||  | |||   | |       |   ||||  ||  |   |    ||| ||     | |  |      ||||  ||| ||||||  |||| |  |     
GACTTGGTTCAAAGTGACAGGGATGATCCCAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAGgtatatatgtacattacagata-attgaaaaatgctgccatccttttaactaatgcttattgtaaacaatattctagaactaggatatataagattgttttttctatggatcttgtgctgcag-

upper sequence: AT1G43690.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G37000.1 (Glycine max), 5'ss of exon 6
GATTCAGTTCAAGCCGACAGGGATGATCCAAACCTCCCCCTAGTAACTGCACCATTTGGACATGCCTCCCAGgta-----atagaacaaacacatttcagaatctagactggttaattgtttc-tcctacttctatcctgtgtttt-gagttctact----gatt--tttctctatgcctctttttttattag
|| |  ||||||   |||||||||||||| | ||| || || || |||||||| ||||| |||||||||||||||      || |  | | | | || | ||      |       || |    | ||  || ||  |  | || | ||  |  | |    ||||  ||| ||||||  |||| |  |     
GACTTGGTTCAAAGTGACAGGGATGATCCTAGCCTACCACTGGTTACTGCACCTTTTGGGCATGCCTCCCAGgtatatatgtacactacagataattgaaaaatgctgccatccttttatccaatgcttattgtaaacaatattctagaactagaatataagattgttttttctatggatcttgtggtgcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830372|gb|CK120056.1|CK120056
EST:     ATGATCCAAACCTCCCCCTAGTAACTGCACCATTTGGACATGCCTCCCAG                         GAAATTGTAAACCTGCTGCTGTGTGGAGAAGCGGTTCCTAATGTATTTGAT
genomic: ATGATCCAAACCTCCCCCTAGTAACTGCACCATTTGGACATGCCTCCCAGgtaatagaac ... tttttattagGAAATTGTAAACCTGCTGCTGTGTGGAGAAGCGGTTCCTAATGTATTTGAT