Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGAGAACATGTCAATTCTTGGGCTAGCAATAAATTCTTCTTCTACGTTgtacgattttcttaaattctaagtgttattcttgcacaattatcatctctaatctaatggaactagaggttaattttcag

Basic information

species Arabidopsis thaliana
transcript AT1G42560.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G42560.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA06G01800.1 (Glycine max), 5'ss of exon 6
ATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGAGAACATGTCAATTCTTGGGCTAGCAATAAATTCTTCTTCTACGTTgta--cgattttcttaaa--------ttctaagtgtta--ttcttgcacaattatcatctctaatctaatggaactagaggttaattttcag--------
||||   |||||| |||||||| |||||||||||||||||  | || ||   || |   ||| |||  |    | | | ||||||  |||||  | ||| ||    |        ||   | | |||  || ||   |  |||| |    ||     |  || ||  |   ||| |||  |        
ATCCTAGAAGATTCAGACTCACTCATGAGACATCATTTGTGAGGGATCACAACAGTATCTGGACTAAAACACCAGTTTCCTTCTATTTTgtaagcaattatcactgacaactctttttccaatattagattattaagcggttattaaaggtatcaccaaagacctcaaaactaagtttttggtttagaa