Sequence
atgc intronic sequence ATGC exonic sequenceGAGGAAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGgtaagttctgatttaccctttttaaagttaagaagagtttgcttttgcaagtctaacccattcggtaggctttatttatacatttctgttccagatccta...
Basic information
species | Arabidopsis thaliana |
transcript | AT1G30970.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G30970.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os09g38790.3 (Oryza sativa), 5'ss of exon 6
GAGGAAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGgtaagttctgatttaccctttttaaagttaagaagagtttgcttttgcaagtctaacccattcggtaggctttatttatacatttctgttccagatccta---
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GAGGAAAGAAGATTGTCGCTACCCAAGTATCAGGTGCATGATGAAACTAGCCAGgtaagttctgatttttataattttatatctgtaatattaatgatatgtgaaaaaaaccaagttgaag---ttcatggggatgctctgaactggaatattgtgt
upper sequence: AT1G30970.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G05390.2 (Glycine max), 5'ss of exon 6
GAGGAAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGgtaagttctgatttaccctttttaaagttaagaagagtttgcttttgcaagtctaacccattcggta--ggctttat--ttatacatttctgttccagatccta-----
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GAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGgtaagtcata--ctacctctttaatagatggag-----ttgctttcaca--tctaaccagatgagtataggctttatgcttcctgttttcagattcagttgtttacaca
upper sequence: AT1G30970.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G34280.1 (Glycine max), 5'ss of exon 6
GAGGAAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGgtaagttctgatttaccctttttaaagttaagaagagtttgcttttgcaagtctaacccattcggtaggctttat---ttatacatttctgttccagatccta------
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GAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGgtaagtcata--ctacctctttaatagatggag-----ttgcttttgca--tctaaccagatgagtaggctttatgcttcctgttttcagattccgttgtttacacatt
upper sequence: AT1G30970.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv01s0011g01240.t01 (Vitis vinifera), 5'ss of exon 6
GAGGAAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGgtaagttctgatttaccctttt-taaagttaa----gaagagtttgcttttgcaagtctaacccattcggtaggctttatttatacatttctgttccagatccta
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GAGGAAAGAAGAATGTCATTAATGAAGTACCAGGTGCATGATGAAACTAGCCAGgtaagttataactacttctgtaatataattcattcaactggatatggagttgct--tccaaccagatgggtaggctttatattt---tgtatttttcatattcaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86076763|gb|DR372520.1|DR372520EST: AAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAG ATGAACTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTT
genomic: AAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGgtaagttctg ... tggtttgcagATGAACTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGAAAGAAGAATGTCCTTACCAAAATACAAAGTGCACGATGAAACCAGCCAGgtaagttctgatttaccctttttaaagttaagaagagtttgcttttgcaagtctaacccattcggtaggctttatttatacatttctgttccagatccta
- - AAAGAA
- - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaga