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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTAAAGACCCAGAAACTCTTGCAAACCTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAAgtataaatattcatgaccttttgcattttctgcataacaacaagtgcatcagtaagctgacttattcctccatttccaatccttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G30630.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125100616|gb|EL156001.1|EL156001
EST:     CGTTGTATGCAGTCTTCACGTCGGGAAATACAATCTTCTCGCTACCTAAA                         CCAGCTGAAACTTTCACATCCAG
genomic: CGTTGTATGCAGTCTTCACGTCGGGAAAT-CA-TCTTCTCGCTACCTAAAgtataaatat ... ccttttgcagCCAGCTGAAACTTTCACATCCAG
EST: gi|116463507|gb|EG506099.1|EG506099
EST:     CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAA                         CCAGCTGAAACTTTCACATCCAGAACACGTCCTTGTGAAGCGAGCAGCATC
genomic: CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAAgtataaatat ... ccttttgcagCCAGCTGAAACTTTCACATCCAGAACACGTCCTTGTGAAGCGAGCAGCATC
EST: gi|86074537|gb|DR370294.1|DR370294
EST:     CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAA                         CCAGCTGAAACTTTCACATCCAGAACACGTCCTTGTGAAGCGAGCAGCATC
genomic: CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAAgtataaatat ... ccttttgcagCCAGCTGAAACTTTCACATCCAGAACACGTCCTTGTGAAGCGAGCAGCATC
EST: gi|116463521|gb|EG506113.1|EG506113
EST:     CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAA                         CCAGCTGAAACTTTCACATCCAGAACAC
genomic: CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAAgtataaatat ... ccttttgcagCCAGCTGAAACTTTCACATCCAGAACAC
EST: gi|86079843|gb|DR375600.1|DR375600
EST:     CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAA                         CCAGCTGAAACTTTCACATCCAGAACACGTCCTTGTGAAGCGAGCAGCATC
genomic: CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAAgtataaatat ... ccttttgcagCCAGCTGAAACTTTCACATCCAGAACACGTCCTTGTGAAGCGAGCAGCATC
EST: gi|125211991|gb|EL226945.1|EL226945
EST:     CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAA                         CCAGCTGAAACTTTCACATCCAGAA
genomic: CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAAgtataaatat ... ccttttgcagCCAGCTGAAACTTTCACATCCAGAA
EST: gi|116463518|gb|EG506110.1|EG506110
EST:     CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAA                         CCAGCTGAAACTTTCACATCCAGAACACGTCCTTGTGAAGCGAGCAGCATC
genomic: CTCGTTGTATGCAGTCTTCACGTCGGGAAATCATCTTCTCGCTACCTAAAgtataaatat ... ccttttgcagCCAGCTGAAACTTTCACATCCAGAACACGTCCTTGTGAAGCGAGCAGCATC