Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGGATCTTCACAGTAGGAGCTACATCTCATGATAGAGTATATAGTAACTCGATAATCCTCGGAAATAATGTCACTATTCCTGGTGTTGGACTCGCATgtaagtccattttggattatagcttagcttcttcttgcttgattaccatctagacctgacctaaccggtttctcatgttttattag

Basic information

species Arabidopsis thaliana
transcript AT1G30600.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30600.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G13590.1 (Glycine max), 5'ss of exon 6
CCATGGATCTTCACAGTAGGAGCTACATCTCATGATAGAGTATATAGTAACTCGATAATCCTCGGAAATAATGTCACTATTCCTGGTGTTGGACTCGCATgtaagtccattttggatta---tagcttagcttcttcttgcttgattaccatctagacctgacctaaccggtttctcatgttttattag--------------------------
||||||||||| || || || || || ||||||||| |||| ||||  |||||  ||   || ||||||||||| ||||| |||||||||||||| ||| ||||     | |||   ||     | ||||||     |  |||  ||   |   | || || |||     |    |  || |  ||| |                          
CCATGGATCTTTACTGTTGGTGCCACCTCTCATGATCGAGTTTATATCAACTCCCTATGTCTTGGAAATAATGTGACTATACCTGGTGTTGGACTTGCACgtaaaattctgttgctctaatcctggttagctatacatgactttgtt-ttagacaaacttggcct--tttggcctttgtggtgcatttgatcttgaaattaccaaagaagtgcag

upper sequence: AT1G30600.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 6
CCATGGATCTTCACAGTAGGAGCTACATCTCATGATAGAGTATATAGTAACTCGATAATCCTCGGAAATAATGTCACTATTCCTGGTGTTGGACTCGCATgtaagtccatttt---ggattatagcttagcttcttcttg--cttgattaccatctagacctgacctaaccggtt--tctcatgttttattag-------
|||||||||||||| || || ||| || ||||||||||||  || |||||||||||  |||| || || || || || |||||||| |||||||| ||| ||| ||  || ||     ||||| |||| | ||   | |    ||  |||        |   |     |    ||  | || || ||||| |        
CCATGGATCTTCACTGTTGGTGCTGCAGCTCATGATAGAGCCTACAGTAACTCGATTGTCCTAGGCAACAACGTTACCATTCCTGGAGTTGGACTTGCACgtaggttaatcttccaaaattattgctttgttttaccatagattttcttattgcaggaaatgggaaagaatttttggtttcttggtttatcatatataca