1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTACTACTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAGgtacttgctgtaggatctgaatttgatttgttctcggtagtagtctctcagaattatggaacatttttagatatttggtcttaacttgattgtgtaaagtgtttgtgattctgtaaaatattttgtcgttcgtgttgcttgattcttaaaatgactaattggtgtgacag
species | Arabidopsis thaliana |
transcript | AT1G29970.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGTAATGGACAGATGCTAGCCATCAACGAG ATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGAEST: gi|164182186|gb|ES085043.1|ES085043
genomic: AGTAATGGACAGATGCTAGCCATCAACGAGgtacttgctg ... ggtgtgacagATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGA
EST: GGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAG ATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGEST: gi|164003393|gb|ES191756.1|ES191756
genomic: GGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAGgtacttgctg ... ggtgtgacagATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGG
EST: GGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAG ATCTT-GAGAAGAACCCAACAACGATCAAGAATTTEST: gi|125137715|gb|EL177508.1|EL177508
genomic: GGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAGgtacttgctg ... ggtgtgacagATCTTTGAGAAGAACCCAACAACGATCAAGAATTT
EST: TGCTAGCCATCAACGAG ATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGA
genomic: TGCTAGCCATCAACGAGgtacttgctg ... ggtgtgacagATCTTTGAGAAGAACCCAACAACGATCAAGAATTTTGGAATCTGGTTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTACTTAAGGAGGCAAAAGAAGGTGAAGAAGAGTAATGGACAGATGCTAGCCATCAACGAGgtacttgctgtaggatctgaatttgatttgttctcggtagtagtctctcagaattatggaacatttttagatatttggtcttaacttgattgtgtaaagtgtttgtgattctgtaaaatattttgtcgttcgtgttgcttgattcttaaaatgactaattggtgtgacag
- - - - - - - - - AAAGAA
- - - - - - - - - AAGAAG
- - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - CAGATG