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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGCTCTCAGGTTTGCGTTTGAGAAGCATATTTCATTGCCTACAGCTAAGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGgtatggagaagattttgactctttcttcctacttttctacagtgtgggtcagttccatatattccagatgatcgttttcaatatagttcaaattacgaatcttaacaagcatatgttctcatag

Basic information

species Arabidopsis thaliana
transcript AT1G29170.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429024|gb|EG471616.1|EG471616
EST:     AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAG                         GCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
genomic: AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGgtatggagaa ... gttctcatagGCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
EST: gi|116428888|gb|EG471480.1|EG471480
EST:     AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAG                         GCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
genomic: AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGgtatggagaa ... gttctcatagGCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
EST: gi|116451506|gb|EG494098.1|EG494098
EST:     AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAG                         GCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
genomic: AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGgtatggagaa ... gttctcatagGCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
EST: gi|116428885|gb|EG471477.1|EG471477
EST:     AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAG                         GCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
genomic: AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGgtatggagaa ... gttctcatagGCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
EST: gi|116428903|gb|EG471495.1|EG471495
EST:     AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAG                         GCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
genomic: AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGgtatggagaa ... gttctcatagGCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
EST: gi|116428889|gb|EG471481.1|EG471481
EST:     AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAG                         GCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
genomic: AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGgtatggagaa ... gttctcatagGCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
EST: gi|116451428|gb|EG494020.1|EG494020
EST:     AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAG                         GCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
genomic: AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGgtatggagaa ... gttctcatagGCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
EST: gi|116451430|gb|EG494022.1|EG494022
EST:     AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAG                         GCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
genomic: AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGgtatggagaa ... gttctcatagGCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG
EST: gi|116451486|gb|EG494078.1|EG494078
EST:     AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAG                         GCCCATCTGAAGAATAATGTCAGGGATGAGAAACAAAGTGCCAACGCAAAG
genomic: AGAACGAACTGCCTAGCATGGTGACTTCTGCTCCTAAACCAGAAATTAAGgtatggagaa ... gttctcatagGCCCATCTGAAGAATAATGTCAGGGAGGAGAAACAAAGTGCCAACGCAAAG