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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTAGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTTgtatgtatattaaattttaatcatcgtttcagacagacgtgattttgatagttggaaacatataaaacctttggggcatttttttatttattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G22870.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os01g42950.2 (Oryza sativa), 5'ss of exon 6
GATCTAGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTTgtatgtatattaaattttaatcatcgtttcagacagacgtgattttgatagttggaaacatataaaacctttggggcatttttttatttattgcag-------
| |||   || ||||| |  || ||  |||||||||| || ||||||||||| ||| ||||||||||| | |   | |  | |  || ||||| | | | || | || | | |||  | | ||||  |     | |     || ||| | |||   ||       
GCTCTTCCTTCTTCCGGAATGATACGCGGTTGCGTGCTCTTCGTTTCCTTGACCATTTGCTTgtatgtgtctattactccagtt-tcttttcacagataagttagtt-gcttgtttcatatatatgcatatcatagcttgcttattt-tctatctgagaatctcg

upper sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 6
GATCTAGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTTgtatgtatattaaattttaatcatc--gtttcagacagacgtg-attttgatagttggaaacatataaaacctttggggcatttttttatttattgcag
| ||    |||||  |    ||||||||||||||||| || || ||||||||||| ||||||||| |  | ||  | ||||  | |   |  | | | | | ||  |   ||  | ||  | |  |  ||   |||   |   | |  |  |||  | |||
GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaagatttttttagtttagccttttagcattaca-aaatgtataacatgcaaattttagagttg-aagttcttgatgatgtgtcctcctttccttcag

upper sequence: AT1G22870.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 6
GATCTAGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTTgtatgtatattaaattttaatcatcgtttcagac-agacgtgattttgatagttggaaacatataaaacctttggggcatttttttatttattgcag
| ||    |||||  |    ||||||||||||||||| || || ||||||||||| ||||||||| |  | ||  | ||||  | |        || | | || |   ||  | ||  | |  |  ||   |||   |   | | ||  |||  | |||
GCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTTgtaagatttttctagtttagccttttagcattacgaaatgttaacatgcaaattttagagttg-aagttcttgatgatgtgtcttcctttccttcag