1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCAGATGATGCTTGTTGTAATTCATGTGAGGAAGTTCGCGAAGCTTACCGAAAGAAAGGTTGGGCCCTCTCGGACCCTGAATCAATCGACCAGgtatactgacgttccttcactaacaacaaaattgggttgatcttggtacttagtttgaaacaaatagtgacaccttgtttggcactaaaatggatatatctaaagaaaccatgggtatctggtctttcgtttcagctatccccacatctagttgtatgatattcttactcatcatttcatttcag
species | Arabidopsis thaliana |
transcript | AT1G22200.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCGAAAGAAAGGTTGGGCCCTCTCGGACCCTGAATCAATCGACCAG TGTAAAAGAGAAGGCTTTGTGCAAAAGGTAAAAGATGAAGAAGGTGAAGGTEST: gi|124781711|gb|EH871654.1|EH871654
genomic: CCGAAAGAAAGGTTGGGCCCTCTCGGACCCTGAATCAATCGACCAGgtatactgac ... ttcatttcagTGTAAAAGAGAAGGCTTTGTGCAAAAGGTAAAAGATGAAGAAGGTGAAGGT
EST: CTTACCGAAAGAAAGGTTGGGCCCTCTCGGACCCTGAATCAATCGACCAG TGTAAAAGAGAAGGCTTTGTGCAAAAGGTAAAAGATGAAGAAGGTGAAGGT
genomic: CTTACCGAAAGAAAGGTTGGGCCCTCTCGGACCCTGAATCAATCGACCAGgtatactgac ... ttcatttcagTGTAAAAGAGAAGGCTTTGTGCAAAAGGTAAAAGATGAAGAAGGTGAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGATGATGCTTGTTGTAATTCATGTGAGGAAGTTCGCGAAGCTTACCGAAAGAAAGGTTGGGCCCTCTCGGACCCTGAATCAATCGACCAGgtatactgacgttccttcactaacaacaaaattgggttgatcttggtacttagtttgaaacaaatagtgacaccttgtttggcactaaaatggatatatctaaagaaaccatgggtatctggtctttcgtttcagctatccccacatctagttgtatgatattcttactcatcatttcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA