1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaagtgtcaatcatatgtcaattttaaagagaatgatagttattgagtttgtttgaccaatcatgatacggttgttgttacag
species | Arabidopsis thaliana |
transcript | AT1G20693.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTG GAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAGEST: gi|124937770|gb|EL014478.1|EL014478
genomic: GTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAG
EST: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTG GAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAGTCAGTGTEST: gi|164173814|gb|ES054557.1|ES054557
genomic: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAGTCAGTGT
EST: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTG GAGGAAGGTCCAAAAGAAGATGAEST: gi|125030413|gb|EL102682.1|EL102682
genomic: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAGAAGATGA
EST: TAAAGCTTACAACAAGAAACTG GAGGAAGGTCCAAAAGTAAGATGAGGAATCTGACAAGTCAGTGTCAGAGGTEST: gi|116400368|gb|EG442960.1|EG442960
genomic: TAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAG-AAGATGAGGAATCTGACAAGTCAGTGTCAGAGGT
EST: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTG GAGGAAGGTCCAAAAGAAGAEST: gi|124777386|gb|EH867329.1|EH867329
genomic: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAGAAGA
EST: AACATTAAAGCTTACAACAAGAAACTG GAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAGTCAGTGTCAGAGGTCEST: gi|125299616|gb|EL313701.1|EL313701
genomic: AACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAGTCAGTGTCAGAGGTC
EST: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTG GAGGAAGGTCCAAAAGEST: gi|164128414|gb|ES207446.1|ES207446
genomic: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAG
EST: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTG GAGGAAGG-CCAAAAGAAGATGAGGAATCTGACAAGTCAGTGTCAGAGGEST: gi|125232624|gb|EL246709.1|EL246709
genomic: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAGTCAGTGTCAGAGG
EST: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTG GAGGAAGGTCCAAAAGAAGAEST: gi|124991886|gb|EL064155.1|EL064155
genomic: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAGAAGA
EST: AAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTG GAGGAAGGTCCAAAAGAAGATGAGGAATEST: gi|164186858|gb|ES210970.1|ES210970
genomic: AAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAGAAGATGAGGAAT
EST: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTG GAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAGTCAGTGTCAGAGGEST: gi|19799425|gb|AU230715.1|AU230715
genomic: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAGTCAGTGTCAGAGG
EST: CAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTG GAGGAAGGTCC-AAAGAAGATGAGGAATCTGACAAGTCAGTGTCAGAGGTCEST: gi|164230474|gb|ES155417.1|ES155417
genomic: CAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAGTCAGTGTCAGAGGTC
EST: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTG GAGGAAGGTCCAAAAGAAGGTGAGGAATCTGACAAG
genomic: AACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaag ... gttgttacagGAGGAAGGTCCAAAAGAAGATGAGGAATCTGACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGgtataacaagtgtcaatcatatgtcaattttaaagagaatgatagttattgagtttgtttgaccaatcatgatacggttgttgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA