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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGGCTTGTTAGAGTTACCACAAGAGTTCACGAGGCATATTTCGCAGAGTTATACCTTTCAAAGgtttgtaacttctggcatagaaatgcatcttccattcattttttcaaaaagttgtcccgaaactcgttatccattactagtatctcacttccatctgttttaaacttttactaaatctgctatgaatggaattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G19660.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116471465|gb|EG514057.1|EG514057
EST:     TTACCACAAGAGTTCACGAGGCATATTTCGCAGAGTTATACCTTTCAAAG                         GTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCA
genomic: TTACCACAAGAGTTCACGAGGCATATTTCGCAGAGTTATACCTTTCAAAGgtttgtaact ... ggaattgcagGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCA
EST: gi|152034732|gb|BP835572.2|BP835572
EST:     CGAGGCATATTTCGCAGAGTTATACCTTTCAAAG                         GTGGGGGATAAGTCGGATGGTGTCAGCTTCGATCTTCGTCCTTCTGATGCA
genomic: CGAGGCATATTTCGCAGAGTTATACCTTTCAAAGgtttgtaact ... ggaattgcagGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCA
EST: gi|125322519|gb|EL336604.1|EL336604
EST:     ACGAGGCATATTTCGCAGAGTTATACCTTTCAAAG                         GTGGGGAATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCA
genomic: ACGAGGCATATTTCGCAGAGTTATACCTTTCAAAGgtttgtaact ... ggaattgcagGTGGGGGATAAGTCGGATTGTGTCAGCTTCGATCTTCGTCCTTCTGATGCA