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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGGATCTAATGACTGACTTTCTTGGTACTCCACCTCCTGAGTCAATATCAAGGgttagtcactcaaaacacttgttcatattttctgtagcaaatttaatgttccatacatcattgagagtaatttaatccttgtaatgagctttgcaatcttggacttctacag

Basic information

species Arabidopsis thaliana
transcript AT1G18150.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18150.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 5'ss of exon 5
GCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGGATCTAATGACTGACTTTCTTGGTACTCCACCTCCTGAGTCAAT-ATCAAGGgttagtcactcaaaacacttgttcatattttctgtagca-aatttaatgttccatacatcattgagagtaatttaatccttgtaatgag--ctttgcaatcttggacttctacag
||||   || |||||  | ||||| |||||||| |||||||| ||||||||||| ||||||||  | ||||| |||||  |  | || ||  |    ||||  || ||| ||    ||    |     ||  ||  ||   ||| || ||   | | ||  | |  | ||  |    || || |   ||   ||| ||||                
GCTTACAGGAAAGCCACTCTTTCCAGGGAAAAATGTTGTGCATCAATTGGATCTCATGACTGATCTACTTGGCACTCCTTCAGCAGAATCCCTTGCTAAGgtatattcaatccttgcaagcttgtgccttcactcaagtgcaatgtattgactcct-cactagtctgtgtgttcacttctttatgcagaattcttcgcaac---------------

upper sequence: AT1G18150.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 5
GCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGGATCTAATGACTGACTTTCTTGGTACTCCACCTCCTGAGTCAATATCAAGGgttagtcactcaaaacacttgttcatattttctgtagcaaatttaa------tgttccatacatcattgagagtaatttaatccttgtaatgagctttgcaatcttggacttctacag
|||    || ||||| |||||||| |||||||| |||||||||||||||||||| |||||||| || ||||| ||||| ||||||||||| ||  |||||||||||   ||||||      || |  ||||||| |   ||||         |||  |||     | || ||||||||  |   ||  ||||  | ||                    
GCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGGACTCCTCCTCCTGAGTCCATTGCAAGGgttagtatatcaaaatctaatttgaagttttctgaaatcaattgtgcaggcttgtgacatggtataatgggagtaattctaaatttccaatgttcctttt------------------

upper sequence: AT1G18150.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 5
GCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGGATCTAATGACTGACTTTCTTGGTACTCCACCTCCTGAGTCAATATCAAGGgttagtcactcaaaacacttgttcatattttctgtagcaaatttaa------tgttccatacatcattgagagtaatttaatccttgtaatgagctttgcaatcttggacttctacag
|||    || ||||| |||||||| |||||||| |||||||||||||||||||| |||||||| || ||||| || || ||||||||||| |   ||||||| |||   ||||||      || |  ||||||| |   ||||         |||  |||   | | |  ||||||||  |   ||  ||||  | ||                    
GCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTCATGACTGATTTGCTTGGCACACCTCCTCCTGAGTCCACTGCAAGGgtcagtatatcaaaatctaatttgaagttttctgaaatcaattgcgcaggcttgtgacatggtttaattggagtaattctaaatttccaatgttcctttt------------------

upper sequence: AT1G18150.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G30790.1 (Glycine max), 5'ss of exon 5
GCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGGATCTAATGACTGACTTTCTTGGTACTCCACCTCCTGAGTCAATATCAAGGgttagt-cactcaaaacacttgttcatattttctgtagcaa-atttaatgttccatacatcattgagagtaatttaatccttgtaatgagctttgcaatcttggacttctacag
|||    || ||||| |||||||| || ||||| || ||||||||||||||||| || |||||| ||||||||||||| ||| ||||  | || || ||||| ||| ||  |||| |  || | ||| ||||    | ||| |  |||  ||      | |  | |  |  | |  |   |  |  | |||||   | | ||            
GCTCAGTGGGAAGCCATTGTTTCCTGGAAAAAATGTAGTGCACCAATTGGATCTCATAACTGACCTTCTTGGTACTCCTCCTGCTGAAACCATTTCTAGGgtcagttcatccaaatctattctacatttttttaacatcaataggtaaaattgtggcaagctgtaatggctaat-gacattaattctaagcttc-tattttt------------

upper sequence: AT1G18150.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G11470.1 (Glycine max), 5'ss of exon 5
GCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGGATCTAATGACTGACTTTCTTGGTACTCCACCTCCTGAGTCAATATCAAGGgttagtcactcaaaacacttgttcatattttctgtagcaaatttaatgttccatacatcattgagagtaatttaatccttgtaatgagctttgcaatcttggacttctacag
|||    || ||||| |||||||| || ||||| || ||||||||||||||||| || || ||| ||||||||||||| ||| ||||  | || || ||||| |||   || |||  ||  |  | ||||| |     | ||  |  | |  |   || |  |   |||||        ||  || |  | |    |  |    |||     
GCTCAGTGGGAAGCCATTGTTTCCTGGAAAAAATGTAGTGCACCAATTGGATCTCATAACCGACCTTCTTGGTACTCCTCCTGCTGAAACCATTTCTAGGgtcagtttatccaaat-ctattctacatttttta----acatcaataggtaaacttatgacaggctgtaat--ggctaatgatattaattctaagcttctatttttc-----

upper sequence: AT1G18150.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 5
GCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGGATCTAATGACTGACTTTCTTGGTACTCCACCTCCTGAGTCAATATCAAGGgttagtcactcaaaacacttgttcatattttctgtagcaaatttaatgttccatacatcattgagagtaatttaatccttgtaatgagctttgcaatcttggacttctacag
||||   || || ||  ||||||| |||||||| || |||||||| |||||||| |||||||| || ||||| |||||  || |||| |||||  ||||||||||| |    |  |   |  |  | |||   ||  | |||| |  |    ||      ||   |||      |  ||   |||  | || ||  ||||            
GCTTACAGGAAAACCGCTGTTTCCGGGGAAAAATGTAGTGCACCAGTTGGATCTCATGACTGATTTGCTTGGCACTCCTTCTGCTGAATCAATCGCAAGGgttagttatctcattctaattctgttttttctggtcactaattgacagactgattgtatgttccaagtggac--actctctgaatttggttagctttctttt----------