Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTAGAAAACCAAAGATAAAGGGTGTTTCTTTAACTGAATTGTTTACTCCGGAACAAGTGAGAGAACATATCCGTGGTCTTCGTCAGTGGGTTGGCCAGgtttgctattttatttacaaaaagtttacagagaagcaagtctattcatatatctaagatgaatctctagctatgtgatcattgatgaataccttgtcatttaaattttaatgtgtgtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G16710.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G16710.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 8
ATCTAGAAAACCAAAGATAAAGGGTGTTTCTTTAACTGAATTGTTTACTCCGGAACAAGTGAGAGAACATATCCGTGGTCTTCGTCAGTGGGTTGGCCAGgtttgctattttatt--tacaaaaagtttacagagaagcaagtctattcatatatctaagatgaatctctagctatgtgatcattgatgaataccttgtcatttaaattttaatgtgtgtgcag
|||| | || ||||| ||||| || || || ||||||||||| |||||||| || ||||| || |||||||||  ||||||  | || ||||||||||||||  |   || ||||  |     |  ||| ||  | |  |||| || |    |   | || | |||      ||   | |||  |  | | |    ||| |                       
ATCTGGCAAGCCAAAAATAAAAGGAGTCTCATTAACTGAATTATTTACTCCAGAGCAAGTCAGGGAACATATCACTGGTCTCAGGCAATGGGTTGGCCAGgtaagtctttgtattcttgtgccatcttttcattggaa-aagtataatttagttcattagttaaataat--actgcattatctgtact-agtttactgtaaacc--------------------