1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACCATTGGCTTACTCACAACTGTTCTCTCGGTTGTTTATTCTGCTGTTCGTGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAGgtatgtttctgacaaaaaaaaccttctcctatactttgcctccttatattgcaagataaggattcattcggaaactcgaatcaaacctgaactgaaacatatattctaaatccctatattgaaaccttgttgtgtgagtgtttgagagttgcttctaagtatcataacgtatttcctttcaatgaaaattttcag
species | Arabidopsis thaliana |
transcript | AT1G16180.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAG AGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGEST: gi|164164101|gb|ES020280.1|ES020280
genomic: TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAGgtatgtttct ... aaattttcagAGAAGCCTCTGCTTCCGATAGACGGGAAAGCAG
EST: TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAG AGAAGCCTCTGCTTCCGEST: gi|163989103|gb|ES050060.1|ES050060
genomic: TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAGgtatgtttct ... aaattttcagAGAAGCCTCTGCTTCCG
EST: CTCTCCCCTCCTGATTCTCCTCGCGCAG AGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAGEST: gi|125034397|gb|EL106666.1|EL106666
genomic: CTCTCCCCTCCTGATTCTCCTCGCGCAGgtatgtttct ... aaattttcagAGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAG
EST: TGATTCTCCTCGCGCAG AGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAGEST: gi|125211009|gb|EL225963.1|EL225963
genomic: TGATTCTCCTCGCGCAGgtatgtttct ... aaattttcagAGAAGCCTCTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAG
EST: TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAG AGAAGCCTCTGCTTCCGATAGACGGGAAAGCAG
genomic: TGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAGgtatgtttct ... aaattttcagAGAAGCCTCTGCTTCCGATAGACGGGAAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATTGGCTTACTCACAACTGTTCTCTCGGTTGTTTATTCTGCTGTTCGTGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAGgtatgtttctgacaaaaaaaaccttctcctatactttgcctccttatattgcaagataaggattcattcggaaactcgaatcaaacctgaactgaaacatatattctaaatccctatattgaaaccttgttgtgtgagtgtttgagagttgcttctaagtatcataacgtatttcctttcaatgaaaattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC