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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTTAGTACATTGATTCTTCTAGCACTTCAACAATATGGGgtacatttgttaagttttgtttattatggcttttaagtctataaattggtattttggttctttttatataattacag

Basic information

species Arabidopsis thaliana
transcript AT1G15960.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA15G00590.1 (Glycine max), 5'ss of exon 6
AGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTTAGTACATTGATTCTTCTAGCACTTCAACAATATGGGgtacatttgttaagttttgtttatt-------atggcttttaagt--ctataaattggtat-tttggttctttttatataattacag-------------------------------
||| ||||| || |||||||| ||||| || || |||||||||||||||||||| |||||||| || |||||||| ||  ||||| | || ||||||||||||  |||   |  |||  |||||        |   || |   ||    ||  | || ||| |||||| || | |||||||  |||                                
AGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGCACATTGATCCTCTTAGCATTACAGCAATATGGGgta-gtttaccatatttcatttatatcattaaaaaactatatggttgtcattgaatgttatatttggtactatctatataaaaacattatgaaccttttttgtattgtttttggacag

upper sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G44710.1 (Glycine max), 5'ss of exon 5
AGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTTAGTACATTGATTCTTCTAGCACTTCAACAATATGGGgtacatttgttaagt-tttgt-ttattatggcttttaagtct-ataaattggtat-tttggttctttttatataattacag-----------------------------
||| ||||| || |||||||| ||||| || || |||||||||||||||||||| |||||||| || |||||||| ||  ||||| | || ||||||||||||  ||| | |  | | ||| | || |       |   | | ||  | || ||| |||||| || | |||||||  |||                              
AGCCTTTGCATTGAACATGCTCTTCAACATACCTGTTTGGATTGGTGTTCTTCTGACAGGACTCAGCACATTGATGCTCTTAGCATTGCAGCAATATGGGgta-gtttatcatatatctgtatcatgaaaaaaaatggttatcattgaatgttatatttggtactatctatataaaaacattgagccttttttgtattgtttttggacag

upper sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G02680.1 (Glycine max), 5'ss of exon 5
AGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTTAGTACATTGATTCTTCTAGCACTTCAACAATATGGGgtacatttgttaagttttgt----ttattatggcttttaagtctataaat---tggtattttggt-tctttttatataat-tacag------------------------------------------------------------------
||| ||||| || |||||||| ||||| || || |||||| ||||||||||||| |||||| | ||||||||||| ||  ||||| | || ||||||||||||  |||  ||  || | |    |   ||  ||  |     | ||   |   ||| || ||  | |  ||| |||| || || |                                                                   
AGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGGTTGGTGTTCTTCTGACAGGATTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGgta-gttttctatattctatagaatctatacagccctcttccccatgggtacctggcatctttctatgatttgatatgatatagaaattattatattattatatcctgaacaaatcaatggttgacattgcattttctttgttgttaaacag

upper sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 7
AGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTTAGTACATTGATTCTTCTAGCACTTCAACAATATGGGgtacatttgttaagttttgtttattatggcttttaagtctataaattggtattttggttctttttatataattacag---------------------------------------
||| ||||| || |||||||| ||||| || || |||||||||||||||||||| ||||||   ||||||||||| ||  ||||| | || ||||||||||||  |||  ||  || | |  | |     |  | |     | |  ||  || ||  |    |||  |     |||                                        
AGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGATTGGTGTTCTTCTGACAGGATCCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGgta-gttttctatattctctacagtcctcttcctca--tggttacctgacatctttctatgatttgaacctgaacaaatcaatggttggcattacattttctttgttgttaaacag

upper sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 7
AGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTTAGTACATTGATTCTTCTAGCACTTCAACAATATGGGgtacatttgt-taagttttgtttattatggcttttaagtc------tataaattggt--attttggttctttttatataattacag--------------
||| ||||| || |||||||| |||||||| || || |||  |||||||||||| ||||| |||||||||||| ||||||||||  | || ||||||||||||  |   | ||  ||   | |   |||  | |  |  |      |||  | ||||  ||||   |  |||| ||  | | | |               
AGCCTTTGCATTGAACATGCTCTTCAATATTCCTGTGTGGTGTGGTGTTCTTCTTACAGGGCTTAGTACATTGGTTCTTCTAGCTTTACAGCAATATGGGgtatgtggatatatcttccatattccatgcatctggatgcaactattattgaatggtttatttacatcgttttcatgcagtaaaaacagaaagtactgta