1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATTGCTCTTTGGTTGGTTTTGTGGTGGAAGCCTGTTCACCTTATGGTAATCATTTCTAAGATGTTCTTTGCAGgtatagtttgaagtatagatcattttacacagagattgatttttttaatgcactctatgtctcatctcttgtgaatgtatattgcag
species | Arabidopsis thaliana |
transcript | AT1G14530.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGGAAGCCTGTTCACCTTATGGTAATCATTTCTAAGATGTTCTTTGCAG GTGTCTCATTGTTTGCGGCCCTTGGCTTTTTATTATATGGAGGAAGEST: gi|116477220|gb|EG519812.1|EG519812
genomic: GTGGAAGCCTGTTCACCTTATGGTAATCATTTCTAAGATGTTCTTTGCAGgtatagtttg ... tatattgcagGTGTCTCATTGTTTGCGGCCCTTGGCTTTTTATTATATGGAGGAAG
EST: GTGGAAGCCTGTTCACCTTATGGTAATCATTTCTAAGATGTTCTTTGCAG GTGTCTCATTGTTTGCGGCCCTTGGCTTTTTATTATATGGAGGAAG
genomic: GTGGAAGCCTGTTCACCTTATGGTAATCATTTCTAAGATGTTCTTTGCAGgtatagtttg ... tatattgcagGTGTCTCATTGTTTGCGGCCCTTGGCTTTTTATTATATGGAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGCTCTTTGGTTGGTTTTGTGGTGGAAGCCTGTTCACCTTATGGTAATCATTTCTAAGATGTTCTTTGCAGgtatagtttgaagtatagatcattttacacagagattgatttttttaatgcactctatgtctcatctcttgtgaatgtatattgcag
- - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG