Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAACCCGAGTTACAACTCTAAGTATGGGATATACACTGAAGGCTGTGGGCTCGACAATGTGTTAATGTCTTGGGGACATGATGATTACATGTACCTTgtaagttcattacaatctcaacatgtgtttatgatttaccgacatgtaagaataatctatatgatgtacataactgaatttcacag

Basic information

species Arabidopsis thaliana
transcript AT1G14520.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G14520.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv09s0002g02940.t01 (Vitis vinifera), 5'ss of exon 7
TGATAACCCGAGTTACAACTCTAAGTATGGGATATACACTGAAGGCTGTGGGCTCGACAATGTGTTAATGTCTTGGGGACATGATGATTACATGTACCTTgtaagttcattacaatctcaacatgtgtttatgatttaccgac-atgtaagaataatctatatgatgtacataactgaatttcacag-----------------------------
  |||| ||   ||||||| ||||||||||| | ||| | || ||||||||||| || |||||| | ||||| ||||| |||||||| ||||||||||| |||  |   | | | |||   ||  | | | || | ||||  | |  ||| | |  | |  ||  | | ||    | |   | |||                              
CTATAATCCTGCTTACAACACTAAGTATGGGGTTTACTCAGAGGGCTGTGGGCTTGAGAATGTGATGATGTCGTGGGGGCATGATGACTACATGTACCTGgtacatgtttcaaactctgctcacat-tatctgctctaccttctacataacatt--ttttcattgttttcaaggttaagagtgacaaaattctaacttcccatctctcatttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124877471|gb|EH956908.1|EH956908
EST:     GGCTCGACAATGTGTTAATGTCTTGGGGACATGATGATTACATGTACCTT                         GTTGCGAAGGAGAATCAAACTACTTTACCATCAGCCGGTCTTTT
genomic: GGCTCGACAATGTGTTAATGTCTTGGGGACATGATGATTACATGTACCTTgtaagttcat ... aatttcacagGTTGCGAAGGAGAATCAAACTACTTTACCATCAGCCGGTCTTTT
EST: gi|164163926|gb|ES196659.1|ES196659
EST:     GGCTCGACAATGTGTTAATGTCTTGGGGACATGATGATTACATGTACCTT                         GTTGCGAAGGAG
genomic: GGCTCGACAATGTGTTAATGTCTTGGGGACATGATGATTACATGTACCTTgtaagttcat ... aatttcacagGTTGCGAAGGAG
EST: gi|164234871|gb|ES038628.1|ES038628
EST:     GATTACATGTACCTT                         GTTGCGAAGGAGAATCAAACTACTTTACCATCAGCCGGTCTTTTCATCATC
genomic: GATTACATGTACCTTgtaagttcat ... aatttcacagGTTGCGAAGGAGAATCAAACTACTTTACCATCAGCCGGTCTTTTCATCATC