Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGATTCAGCAACCACGTGTACCTTCTTCTGGGTTGATGCCTGCCAGTGATGTCCTGATTCGGGCCAAAGAGgtttgatgaatcgctctacacacttaatattctggaaatttaaatttgatcgagattttctctttctgctttgcttctacctactttcctatattatatc...

Basic information

species Arabidopsis thaliana
transcript AT1G09130.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09130.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA19G42180.1 (Glycine max), 5'ss of exon 6
CGATGATTCAGCAACCACGTGTACCTTCTTCTGGGTTGATGCCTGCCAGTGATGTCCTGATTCGGGCCAAAGAGgtttga-tgaatcgctctacacacttaatattctggaaatttaaatttgatcgagattttctctttctgctttgcttctacctactttcctatattatatc
| ||||||||||| || ||| | ||||| ||||||||||||||||| |||||||| || ||||| || || |||||| |  |   | | ||  | | |     |   |||  ||     ||||      |   | |  |  ||| |  ||  |       |    |  ||| || 
CCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTGATGTTCTTATTCGTGCAAAGGAGgttagtctactttggtcccccctccctccaaa-tggttatggttgtttggcaatcaccatgtaatattgcctgactatttttcttgtcgtaaagttacatt

upper sequence: AT1G09130.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA03G39570.1 (Glycine max), 5'ss of exon 6
CGATGATTCAGCAACCACGTGTACCTTCTTCTGGGTTGATGCCTGCCAGTGATGTCCTGATTCGGGCCAAAGAGgtttga-tgaatcgctctacacacttaatattctggaaatttaaatttgatcga-gattttctctttctgctttgcttctacctactttcctatattatatc
| ||||||||||| || ||| | ||||| ||||||||||||||||| |||||||| || ||||| || || |||||| |  |   | | |       | |  | || |  |   |||    |||   |  | |||      |  |    |   |   ||   |  | |   | || 
CCATGATTCAGCAGCCTCGTATTCCTTCCTCTGGGTTGATGCCTGCAAGTGATGTTCTTATTCGTGCAAAGGAGgttagtctactttggttgttcttcattgtgtttttcatcattaggaatgacaaacaaatttggtccccctccccccaaatggttatgattgtttggca-at-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124799194|gb|EH888873.1|EH888873
EST:     CTTCTTCTGGGTTGATGCCTGCCAGTGATGTCCTGATTCGGGCCAAAGAG                         GTCATTACAAATAGGGATAATACTTGTGGAACTACTATCAAAGCATAC
genomic: CTTCTTCTGGGTTGATGCCTGCCAGTGATGTCCTGATTCGGGCCAAAGAGgtttgatgaa ... gcaattgcagGTCATTACAAATAGGGATA-TACTTGTGGAACTACTATCAAAGCATAC
EST: gi|124901469|gb|EH975549.1|EH975549
EST:     ATTCGGGCCAAAGAG                         GTCATTACAAATAGGGATATACTTGTGGAACTACTATCAAAGCATACTGGG
genomic: ATTCGGGCCAAAGAGgtttgatgaa ... gcaattgcagGTCATTACAAATAGGGATATACTTGTGGAACTACTATCAAAGCATACTGGG