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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTCTATCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATTAATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTgtacgtacaaacttatgcattcttgtccttctaggtaacaatattatgatttcttgcagaagctttaacttgttatcttattttctctttctag

Basic information

species Arabidopsis thaliana
transcript AT1G08860.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 6
ACTCTCTATCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATTAATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTgtacgtacaaacttatgcattcttgtccttctaggtaacaatattatgatttcttgcagaagc--tttaacttgttatcttattttc-tctttctag---
| |  || | || |||||||| || |||||||| |  | ||  | ||||||    || || |||    | ||||||||||||||||| |||||||| |||||| | |     ||      | ||| |  | || ||  ||   || |  ||| ||  |   ||  |||       | ||| || ||| | ||||| |   
AATTACTGTTCATGCTGAAGAGACCGTTGCTTCAAGGAGTGCAGTTGAGATGGTCTTACGTTGTACTCACTTGGATAACAAGGACTTTTTCTCTAAAAGTgtatgcattctattcccacatgttgcctatttaagtg-catgtttgttttttatttgattggccttttggaaaaatctctcatattcgtttttcttgcag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 5'ss of exon 4
ACTCTCTATCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATTAATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTgtacgtac---aaacttatg--------cattcttgtccttctaggtaacaatattatgatttcttgcagaagctttaacttgttatcttattttctctttctag
|||| || |||| || || |||||||||||||| |  | ||    |||| |||  || |  |||    | ||||| |||||||||||||||||||| |||||| ||||    |||  |||        |||| |  | ||| |||||  || |  | ||  ||   |    |  |||  ||  |  | || ||||   ||  |||
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGAAAACAAGGACTTGTTCTCTAAAAGTgtatgtactcagaacccatgacttagagcattttgttacttataggtg-cattgatttgtgtttgggtgttaaatttttctcatctttttttttttctttattag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 7
ACTCTCTATCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATTAATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTgtacgtac--aaacttatgcattcttgtccttc--taggtaacaatattatgatttcttgcagaagctttaacttgttatcttattttctctttctag---
|||| || |||| || || |||||||||||||| |  | ||    |||| |||  || |  |||    | ||||| |||||||||||||||||||| |||||| ||||  | |    ||  ||   |   ||   ||  ||    | |  |||||| |    |   ||| || || | |  |  |||| | | | ||    
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGACAACAAGGACTTGTTCTCTAAAAGTgtatgtacttagaaccctgacttagagcattttgttacttattggtgtattgatttgtgtttgggtcttaaatttttcacatctttttttttctttattag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 3
ACTCTCTATCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATTAATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTgtacgtacaaacttatgcattcttgtccttctaggtaacaatattatgatttcttgcagaagctttaacttgttatcttattttctctttctag---
|||| || |||| || || |||||||||||||| |  | ||    |||| |||  || || |||    | ||||| |||||||||||||||||||| |||||| ||||  |           | |  | | | | ||    | |  |||||| |    |   ||| || || | |  |  |||| | | | ||    
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCGTTGTTCACACTTGGACAACAAGGACTTGTTCTCTAAAAGTgtatgtacttagaaccctgacttagagcattttgttacttgtgtattgatttgtgtttgggtcttaaatttttcacatctttttttttctttattag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 6
ACTCTCTATCCAAGCTGAAGAAACAGTTGCTTCTAAAACTGTCGCTGAGATTAATTTTCGCTGTGTCAATTTGGATAACAAGGACTTGTTCTCTAAGAGTgtacgtac---aaacttatgcattcttgtccttc-taggtaacaatattatgatttcttgcagaagctttaacttgttatcttattttctctttctag-----
|||| || |||| || || |||||||||||||| |  | ||    |||| |||  || |  |||    | ||||| |||||||||||||||||||| |||||| ||||    |||  |||  ||   |   ||  |   | | |     ||   ||  ||     |  |||| || || || | |||| | |||||       
ACTCACTGTCCATGCAGAGGAAACAGTTGCTTCAAGGAATGCTATTGAGGTTATATTCCATTGTTCACACTTGGAAAACAAGGACTTGTTCTCTAAAAGTgtatgtacttcgaacccatgacttagagcattttgttacttataggtgcattgatttgtgtttgggtcttaaatttttctcatcttttttttttctttattag