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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGCTTCCGGGATCCCTCCTTAAGTACGAGGGCAGTGATATTTCCGGTGTCCTTGTGCCGTGGCTGTATATTGGGATGTGCTTTTCTTCTTTCTGCTGGgtaagattgatctctgtgaattgcataatttattttgcaggttaaagcatgtacttagttgggatctcttccttttactgaaatcaagcgtagcctcata...

Basic information

species Arabidopsis thaliana
transcript AT1G08620.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08620.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os05g10770.1 (Oryza sativa), 5'ss of exon 6
AAGGCTTCCGGGATCCCTCCTTAAGTACGAGGGCAGTGATATTTCCGGTGTCCTTGTGCCGTGGCTGTATATTGGGATGTGCTTTTCTTCTTTCTGCTGGgtaagattgatctctgtga-attgcataatttattttgcaggttaaagcatgtacttagttgggatctcttcctt---ttactgaaatcaagcgtagcctcata------------------------
 || || |  || ||  | |||   | ||||||| |||| ||||| ||||| || ||||| ||| ||||| |||| ||||| ||||| || ||||||||||||||||       ||||| ||||| |    |   || | | |  |    ||    | | |    | | ||||      ||   ||    ||  | |   ||                          
TAGACTACAAGGTTCAGTTCTTTCTTTCGAGGGCGGTGACATTTCTGGTGTTCTAGTGCCTTGGGTGTATGTTGGCATGTGTTTTTCATCATTCTGCTGGgtaagatg----cttgtgatattgcttgtcatgactttctgttctagttgtgcttcttgattcttttttttcccgaaactatccaacctgagatttgttacactcaattgtgttatgtctactaacag

upper sequence: AT1G08620.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G027075_T02 (Zea mays), 5'ss of exon 6
AAGGCTTCCGGGATCCCTCCTTAAGTACGAGGGCAGTGATATTTCCGGTGTCCTTGTGCCGTGGCTGTATATTGGGATGTGCTTTTCTTCTTTCTGCTGGgtaagattgatctctgtgaattgcataatttattttgcaggttaaagcatgtacttagttgggatct--cttccttttactgaaatcaagcgtagcctcata-----------
 || || |  || ||  | ||    |  || ||  | || || || |||||  | || || ||||||||| |||| ||||||||||| || ||||||||||||||||    ||   ||   ||  || ||  | || |   | | |   |   | |  |    || |  | | | | | |||| ||    |   | |   |            
TAGACTACAAGGTTCAGTACTATCTTTTGAAGGTGGGGACATCTCTGGTGTTTTGGTCCCTTGGCTGTATGTTGGAATGTGCTTTTCATCATTCTGCTGGgtaagatg---cttgttggcatgtctacttc-tcttaccattaatattgttgtcattatccaaatttaacattcatgttctgagattttacactggcatgtctctgctgacag

upper sequence: AT1G08620.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G107109_T02 (Zea mays), 5'ss of exon 6
AAGGCTTCCGGGATCCCTCCTTAAGTACGAGGGCAGTGATATTTCCGGTGTCCTTGTGCCGTGGCTGTATATTGGGATGTGCTTTTCTTCTTTCTGCTGGgtaagattgatctctgtgaattgcataatttattttgcaggttaaagcatgtacttagttgggatct--cttccttttactgaaatcaagcgtagcctcata-----------
 || || |  || ||  | ||    |  |||||| |||| || || |||||  | || || ||||||||| | || ||||||||||| || ||||||||||||||||    ||   ||   ||  || ||  | || ||  | | |   |   | |  |    || |  | | | | | |||| ||    |   | |   |            
TAGACTACAAGGTTCAGTACTATCTTTTGAGGGCGGTGACATCTCTGGTGTTTTGGTCCCTTGGCTGTATGTCGGAATGTGCTTTTCATCATTCTGCTGGgtaagatg---cttgttggcatgtctacttc-tcttacaattaagattgttgtcattatccaaatttaacattcatgttctgagattttacactggcatgtctctgctgacag

upper sequence: AT1G08620.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S127_125V6.1 (Physcomitrella patens), 5'ss of exon 6
AAGGCTTCCGGGATCCCTCCTTAAGTACGAGGGCAGTGATATTTCCGGTGTCCTTGTGCCGTGGCTGTATATTGGGATGTGCTTTTCTTCTTTCTGCTGGgtaagattgatctctg---tgaattgcat-----aatttattttgcaggt-taaagcatgtacttagttgggatctcttccttttactgaaatcaagcgtagcctcata----------------------------------------------------
|||   ||| || ||| | ||    |  ||||   | || ||||| || || |||||||||||| |||| |||||||||||||||||||| || |||||||||||    |   |||   |||||||  |     ||| ||   ||||| | | || | ||   | |  |     || |      | ||| ||   | | |  |   |||                                                    
AAGATATCCTGGTTCCATGCTATCATTTGAGGATGGAGACATTTCTGGGGTGCTTGTGCCGTGGTTGTACATTGGGATGTGCTTTTCTTCATTTTGCTGGgtaagtaaaaaacctgacctgaattgatttctcgaatgtaacatgcagttatcaaacttgagttgatgtacagactttagtgcgttctgcaacttaccatttcgcgatatggatgttaaccttgtagtcctaatcttcataaattgtggagtattttgcag