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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCTAAGCCTACAATGGCAGTTATGGATGGTCCTCTTGAACCATCATCAACTGCTAGGGATGCCCCTGATGATCCTGCTTTTGTCAACTTCTTTAGCgtaagtttctaaagcttctgttacacactcacactatcatcttcaccatgacagcatcttatacgactaatggcaggagggctttctattagttctagccttctaggttcttgaattatcttcagcgtagtatatggtccaacttagactcctcaaattgtaacactgaatttatctaaattgttgacag

Basic information

species Arabidopsis thaliana
transcript AT1G08370.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08370.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G39120.1 (Glycine max), 5'ss of exon 6
GGAAGCTAAGCCTACAATGGCAGTTATGGATGGTCCTCTTGAACCATCATCAACTGCTAGGGATGCCCCTGATGATCCTGCTTTTGTCAACTTCTTTAGCgtaagtttctaaagcttctgttacacactcacactatcatcttcaccatgacagcatcttatacgactaatggcaggagggctttctattagttctagccttctaggttcttgaattatcttcagcgtagtatatggtccaacttagactcctcaaattgtaacactgaatttatctaaattgttgacag
             || |||||||| ||||||||||||||||| ||||||||| || |||    | ||  ||  | |  || |  ||   |    |     ||||  ||||  ||  | ||| || || | | |  | ||| ||     | | ||  | ||||   | |  |      |   | |||  ||| |||||  |||      ||||||   ||  |  ||                                                                
------------AACTATGGCAGTAATGGATGGTCCTCTTGAGCCATCATCATCTACTAC---TTCCAATGTGGCTGATGTTCCTGATGATCCATCCTTTGTAAACTTCTTCAGTgtatgt-ac-cattgata--accatgtttg---taatagtttgttattgcaatctttt----aatccattcatttatttctaaactttcttaatcttgataaataatgtgc----------------------------------------------------------------