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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTGGATCGCTCCGGGTTGCAGAACTCGACTGGGGAAACGAAGATCATATAACGGCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTTgtaagttcatcggaatcttcaaatgattcactctaatcatgtaatctagaaagactgaattcagctcaagggagactgacctcaccttaaatttggttttaag

Basic information

species Arabidopsis thaliana
transcript AT1G08125.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08125.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os02g57330.2 (Oryza sativa), 5'ss of exon 5
--CATTTGGATCGCTCCGGGTTGCAGAACTCGACTGGGGAAACGAAGATCATATAACGGCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTTgtaagtt-----catcggaatcttcaaatgattcactctaatcatgtaatctagaaagactgaattcagctcaagggagactgacctcaccttaaatttggttttaag
  |  | || ||  ||   ||||||||| | |||||||| ||| ||||||||||||  || ||||| ||||| || || ||  |||| || ||||||||||||||||     |   || | ||| |  |   |  ||| |||    ||  |||   |  ||||  |  ||| ||        | | | |  ||  | ||| | |    
CTCCATCGGCTCTGTCACCGTTGCAGAATTGGACTGGGGTAACAAAGATCATATAAGAGCTGTTGATCCTCCATTCGATTACATCATTGGAACTGATGTTgtaagttttctgcgctggcagcttgagtttggtgcctcaaatagcttatcctactta--ctgatat--gctaaatttcatgcgtcatgatatttcagttgttct----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414103|gb|EG456695.1|EG456695
EST:     ATATAACGCCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTT                         GTATATTCTGAGCAGCTTCTGGAACCGCTATTGCGTACGATACTTGCATTA
genomic: ATATAACGGCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTTgtaagttcat ... tggttttaagGTATATTCTGAGCAGCTTCTGGAACCGCTATTGCGTACGATACTTGCATTA
EST: gi|164147828|gb|ES203978.1|ES203978
EST:     ATATAACGGCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTT                         GTATATTCTGAGCAGCTTCTGGAACCGCTATTGCG
genomic: ATATAACGGCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTTgtaagttcat ... tggttttaagGTATATTCTGAGCAGCTTCTGGAACCGCTATTGCG
EST: gi|116414102|gb|EG456694.1|EG456694
EST:     ATATAACGGCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTT                         GTATATTCTGAGCAGCTTCTGGAACCGCTATTGCGTACGATACTTGCATTA
genomic: ATATAACGGCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTTgtaagttcat ... tggttttaagGTATATTCTGAGCAGCTTCTGGAACCGCTATTGCGTACGATACTTGCATTA
EST: gi|164069969|gb|ES141569.1|ES141569
EST:     ATATAACGGCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTT                         GTATATTCTGAGCAGCTTCTGGAACCGCTATTGCGTACGATAC
genomic: ATATAACGGCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTTgtaagttcat ... tggttttaagGTATATTCTGAGCAGCTTCTGGAACCGCTATTGCGTACGATAC