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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCCCGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGgtactataactgccatcttttcgcaaccattgatcttacttaatcatcattcttccacagatttattgaaaaagcacattgctttgcttatcttctttgtttacag

Basic information

species Arabidopsis thaliana
transcript AT1G04430.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04430.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv05s0049g01180.t01 (Vitis vinifera), 5'ss of exon 6
CAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCCCGTCTTGCGGATTTCGGTTATTCAACCGACATGTTTGAGAAGGACACGgtactataac----tgccatcttttc-gcaaccattgatctta-------cttaatcatcattcttccacagatttatt-gaaaaagcacattgctttgcttatcttctttgtttacag------------------
|| ||| ||||  || ||||||||||||||||||  |||  || | ||||| ||||| || ||||| || |||||||  ||||| |||||||||||||||||| | | |     | ||  ||| || ||||   || |  ||        | |  |  | | |        ||| | || | |||  ||     |       |   | |  | |||||                   
CAGGGGTAGTGAATTGGCTCCTTGGCCAGCTAGGGCGACCGCTCCACCTCCACGTCTAGCTGATTTTGGCTATTCAAAAGACATATTTGAGAAGGACACGgtaatttgaggcagtacccccttgtctgcaattttttagtttgtaaagatcctttttgttagtgcattgtggatatgtttgcaaatacaacacacacatacaaaagtgtgggcttacaaattgatggtgtggtgcag