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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTCTTTGTATGAGCAAGTGATTGCTGTTGAAAAGGGGAAAGAACATTCCACAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTGgtacgtcacatggtctctacactactaagactttatagtactgatttttgaactcgttttgttttgttttcgtgatggagtatgtagtgatactttatagtactgatttttgaactcattttgtttttgttttcgtgatggagtatgtagtgatttggcttcttacttttcttaatattactttcag

Basic information

species Arabidopsis thaliana
transcript AT1G04080.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116402611|gb|EG445203.1|EG445203
EST:     CCACAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTG                         GTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACTTGAC
genomic: CCACAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTGgtacgtcaca ... ttactttcagGTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACTTGAC
EST: gi|124900046|gb|EH974664.1|EH974664
EST:     CCACAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTG                         GTCTCCAGGGATG
genomic: CCACAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTGgtacgtcaca ... ttactttcagGTCTCCAGGGATG
EST: gi|124951590|gb|EL026944.1|EL026944
EST:     CAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTG                         GTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACT
genomic: CAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTGgtacgtcaca ... ttactttcagGTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACT