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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCACTAGGAGCTATAATGTACGAAATGCTGGTTGGGTATCCACCCTTTTACGCCGACGACCCAATGTCTACTTGTAGAAAGgtttcaatacttaattttgtaaaaaattaatcatttgacttttgttttttttctaatgaactttatgtatttataagctagaatttatgaatgcaaaaaaacag

Basic information

species Arabidopsis thaliana
transcript AT1G03920.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03920.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S87_129V6.1 (Physcomitrella patens), 5'ss of exon 7
GTGGTCACTAGGAGCTATAATGTACGAAATGCTGGTTGGGTATCCACCCTTTTACGCCGACGACCCAATGTCTACTTGTAGAAAGgtttcaatacttaattttgtaaaaaattaatcatttgacttttgttttttttctaatgaactttatgtatttataagctagaatttatgaatgcaaaaaaacag
||||||||||||||| || |||||||| ||||||||||| || || || || ||| | || || || ||| | |||||| | |||||    ||   |  |  | |      ||  |  | ||   |||  ||| | | || ||||| || |  |  | |    |  |||||   |||    ||   |  
GTGGTCACTAGGAGCAATCATGTACGAGATGCTGGTTGGTTACCCCCCTTTCTACTCTGATGAACCCATGACAACTTGTCGCAAGgtaggtatctcttgtcgtcttttcgtttctttttgtgtgctttcatttgtctatagtgaacattgtcca--tgttgtttcaaattttctaataaccaattcc--

upper sequence: AT1G03920.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ28086 (Selaginella moellendorffii), 5'ss of exon 7
GTGGTCACTAGGAGCTATAATGTACGAAATGCTGGTTGGGTATCCACCCTTTTACGCCGACGACCCAATGTCTACTTGTAGAAAGgtttcaatacttaattttgtaaaaaattaatca-tttgacttttgttttttttctaatgaac--tttatgtatttataagctagaat-ttatgaatgcaaaaaaacag---------------------------
|||||| || ||||||||||||||||| ||||| || |||||||| ||||| ||  ||||||| || |||||||||||  | |||||       |  |  ||  |  |  ||| || | |||     | | ||   |  |||  |    ||| ||||||| || |   || | ||||  ||   | |  |  |                           
GTGGTCTCTTGGAGCTATAATGTACGAGATGCTAGTCGGGTATCCGCCCTTCTATTCCGACGAACCGATGTCTACTTGCCGGAAGgtacgccatcacatcttgattgactattcatgaattttgtactcgcttgcctcataactacgcatttttgtatttttatgtgtgattgttattgatcagatagcatcgcgttaagatgtcttgtttcattgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083712|gb|DR379471.1|DR379471
EST:     CAATGTCTACTTGTAGAAAG                         ATAGTGAATTGGAAAACACATTTGAAGTTCCCTGAAGAATCAAGGCTATCA
genomic: CAATGTCTACTTGTAGAAAGgtttcaatac ... aaaaaaacagATAGTGAATTGGAAAACACATTTGAAGTTCCCTGAAGAATCAAGGCTATCA