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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTCAATCTCATGTCTCCAGACTCGATCCGCAAAACCCCTCCATGTTTGGAGCATTACCTATGAGTTATGTTCCTCCTTACAATGGATATGGCTATCATgtaagttcttgttttctcatctacttggattgaactttttggactcatgaggtttgaaaaagctgtagagattggtgtattttggttgcaagactttttttatttgatccttaaaacttttctctataacag

Basic information

species Arabidopsis thaliana
transcript AT1G03457.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03457.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA03G36650.2 (Glycine max), 5'ss of exon 6
AGTTCAA---TCTCATGTCTCCAGACTCGATCCGCAAAACCCCTCCATGTTTGGAGCATTACCTATGAGTTATGTTCCTCCTTACAATGGATATGGCTATCATgtaagttcttgttttctcatctacttggattgaactttttggactcatgaggtttgaaaaagctgtagagattggtgtattttggttgcaagactttttttatttgatccttaaaacttttctctataacag----------------------------------------------
    |||   ||| ||||  |       ||| | ||  |||| ||  |||||||||| || |||||||||||||||||||| || ||||||||||| ||||| || ||||||         || |  | |  ||     || |  |  | ||  || |  |     | |  | | |  ||| ||    |  ||  |    ||  |||||    ||||   |  | || ||                                                   
---CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGgttagttctatcaggactattttttagctttttttcttcttaatccttgcagtcttta----ttctgcataattatgtcttccaat--cagaaaccattgcatttgtgtattaatgttagtttccatgcttaacttcttcataggatatttgtgatgctaatcattttctcttgatag

upper sequence: AT1G03457.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA19G39300.1 (Glycine max), 5'ss of exon 6
AGTTCAA---TCTCATGTCTCCAGACTCGATCCGCAAAACCCCTCCATGTTTGGAGCATTACCTATGAGTTATGTTCCTCCTTACAATGGATATGGCTATCATgtaagttcttgttttctcatctacttggattgaactttttggactcatgaggtttgaaaaagctgtagagattggtgtattttggttgcaagactttttttatttgatccttaaaacttttctctata-acag---------------------------------------------
    |||   ||| ||||  |       ||| | ||  |||  || ||||||||||| || |||||||||||||||||||| || ||||||||||  ||||| || ||||||         || |  | | |||     | ||  |  | ||  || |        | |  | | |  ||  ||    |  ||  |    ||  |||||    ||||   |  | || ||  | |                                              
---CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCTGTCAATGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGCTTATCAGgttagttctaacaggactattttttagcattttttctctta-atccttgcagtctttc----ttctgcatagttatgccttccaat--cagaaaccattgcatttgtgtattaatgttagtttccatgcataagttcttgataagatatgtgtgatgctaatcattttctcttgatag

upper sequence: AT1G03457.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G17090.1 (Glycine max), 5'ss of exon 6
---AGTTCAATCTCATGTCTCCAGACTCGATCCGCAAAACCCCTCCATGTTTGGAGCATTACCTATGAGTTATGTTCCTCCTTACAATGGATATGGCTATCATgtaagttcttgttttctcatctacttggat--tgaactttttggactcatgaggtttgaaaaagctgtagagattggt-gtattttggt-tgcaagactttt---tttat---ttgatccttaaaacttttc-tctataacag-------------------------------------------
   ||||   ||| |||   |       ||||| ||| |||||||  | |||||||| || || ||| ||||||||||||| || ||||||||||| ||||| || ||||||| | |  |   ||| | | ||    | | ||||   | | | |     | ||    | |  ||  |  |  | |  |  | ||  | | | ||   |||||   || || |||   | ||||| |   |||||                                            
CCGAGTT---TCTAATGCGCCGCATGCTGATCCTCAACACCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttcttctataatgcactattagaatacctagcatttttcccccttaattcaaggaacttttcttcagtataatcatgtcatcctatgagaaattattacatttatggattaatgcttgttatttttcatgcctaacatcttgatggaggcatatgtttgaataatcatgttttctcaatag

upper sequence: AT1G03457.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G02700.1 (Glycine max), 5'ss of exon 6
--AGTTCAATCTCATGTCTCCAGACTCGATCCGCAAAACCCCTCCATGTTTGGAGCATTACCTATGAGTTATGTTCCTCCTTACAATGGATATGGCTATCATgtaagttcttgttttctcatctacttggattgaactttttggactcatgaggtttgaaaaagctg---tagagattggtgtattttggttgcaag-----actttttttatttgatccttaaaacttttctc-tataacag-------------------------------------------
  |  |   |  |||| | | || || ||||| ||| | |||||  | |||||||| || || ||| ||||||||||||| || ||||||||||| ||||| || ||||||  | |  |    || | | ||   |   |||   | | | |     | ||    |    |  | | |  |||  |    |   ||      || ||| |   || ||   |   | |||||     |||||                                            
CCAAGTTTCTAACATGCCGC-AGGCT-GATCCTCAACATCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttctgctataatgcattattagaataataacattttcccccttaattcagggaacttttcttctgtacaatcatgtcgtcctatgagaaattattacatttatggattaatgtctgttatttttcctgcctaacatcttgatggaggtatatgtttgaataatcattttttctcaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124897078|gb|EH973292.1|EH973292
EST:     TTCCTCCTTACAATGGATATGGCTATCAT                         GTGCCTGGAACTTATGGCTACATGCTACCACCTATCCAGACTCAACATGCA
genomic: TTCCTCCTTACAATGGATATGGCTATCATgtaagttctt ... tctataacagGTGCCTGGAACTTATGGCTACATGCTACCACCTATCCAGACTCAACATGCA