1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTCACTGTGGTTCTTGCTGGGCCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGgtaacatagatttcttactgtagccaagattgatgatggctagtgtttttctcttcgaatgattaatattcgtttcttttgttcgtatgcag
species | Arabidopsis thaliana |
transcript | AT1G02305.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCATCAAATATAACATG AATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGCEST: gi|125213184|gb|EL228057.1|EL228057
genomic: TGCATCAAATATAACATGgtaacataga ... tcgtatgcagAATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGC
EST: CTGACAGATTCTGCATCAAATTATAACATG AATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGEST: gi|116429058|gb|EG471650.1|EG471650
genomic: CTGACAGATTCTGCATCAAA-TATAACATGgtaacataga ... tcgtatgcagAATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTG
EST: TTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATG AATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGCEST: gi|124959500|gb|EL034204.1|EL034204
genomic: TTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGgtaacataga ... tcgtatgcagAATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGC
EST: TCACTGTCTGACAGTTTCTGCATCAAATATAACATG AATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGCEST: gi|86038017|gb|DR333772.1|DR333772
genomic: TCACTGTCTGACAGATTCTGCATCAAATATAACATGgtaacataga ... tcgtatgcagAATGTTTCTTTATCTGTCAATGATCTTTTAGCATGTTGTGGATTCCTTTGC
EST: TTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAA-TATRACATG AATGTTTCTTTATCTGTCAATGATCTT
genomic: TTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGgtaacataga ... tcgtatgcagAATGTTTCTTTATCTGTCAATGATCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCACTGTGGTTCTTGCTGGGCCTTTGGTGCTGTTGAATCACTGTCTGACAGATTCTGCATCAAATATAACATGgtaacatagatttcttactgtagccaagattgatgatggctagtgtttttctcttcgaatgattaatattcgtttcttttgttcgtatgcag
- - - - - - - - - - - - - - - GCTGTT