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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCGTTTGCAGCTGGTAGGGATCTAAGGCCAGGTCAACTAGGGAATATGTTACACACATTGTCCAACTGgtagttttcttcttcccttagatccaggattttttgccttctatatctaattataagaacttgtacgtgatgttagaatacatggctaatgacgtcctactcttttatgtgttggcccaaattgatgtctag

Basic information

species Arabidopsis thaliana
transcript AT1G02090.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02090.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G25690.1 (Glycine max), 5'ss of exon 6
GTTCCGTTTGCAGCTGGTAGGGATCTAAGGCCAGGTCAACTAGGGAATATGTTACACACATTGTCCAACTGgtagt-tttcttcttcccttagatccaggattttttgccttc-tatatct---aattataagaacttgtacgtgatgttagaatacatggctaatgacgtcctactcttttatgtgttggcccaaattgatgtctag
|| |  |||||||||||||||||  | ||||| | |||||||||||||||| |||| ||  | || |||||||| | | |||| ||| | |||   |  |||| ||||   || ||| |||   | |||  | | |   |||   | | | ||| | ||     ||||  |                                     
GTCCAATTTGCAGCTGGTAGGGACTTGAGGCCTGATCAACTAGGGAATATGATACAGACTCTCTCTAACTGgtattatatctttttcacgtaggggcttgattatttgtagtcatatgtctgttatttagtaaatcaattaccaaaggctggaaaaaataat--atgaaattt-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164006620|gb|EL970637.1|EL970637
EST:     GATCTAAGGCCAGGTCAACTAGGGAATATGTTACACACATTGTCCAACTG                         GTTGAACACGTCAG
genomic: GATCTAAGGCCAGGTCAACTAGGGAATATGTTACACACATTGTCCAACTGgtagttttct ... tgatgtctagGTTGAACACGTCAG
EST: gi|86080813|gb|DR376570.1|DR376570
EST:     GATCTAAGGCCAGGTCAACTMGGGAATATGTTACACACATTGTCCAACTG                         GTTGAACACGTCAGAGAATCTGCTCATTTCAATTCAAGACAAGWTCAAATG
genomic: GATCTAAGGCCAGGTCAACTAGGGAATATGTTACACACATTGTCCAACTGgtagttttct ... tgatgtctagGTTGAACACGTCAGAGAATCTGCTCATTTCAATTCAAGACAAGATCAAATG
EST: gi|164205748|gb|ES045915.1|ES045915
EST:     GATCTAAGGCCAGGTCAACTAGGGAATATGTTACACACATTGTCCAACTG                         GTTGAACACGTCAGAGAA
genomic: GATCTAAGGCCAGGTCAACTAGGGAATATGTTACACACATTGTCCAACTGgtagttttct ... tgatgtctagGTTGAACACGTCAGAGAA