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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCTGTGCTTCCGGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaacctaaacttgatcaatgaaaagactctgttttttttttctcttactctaatcctttaggtcagtttaaatggtcttgtactccaatcttgtatttttggcgctgtaattttag

Basic information

species Arabidopsis thaliana
transcript AT1G01050.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01050.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA16G01960.1 (Glycine max), 5'ss of exon 4
GAACCTGTGCTTCCGGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaacctaaacttgatcaatgaaaagactctgttttttttttctcttactctaatcctttaggtcagtttaaatggtcttgtactccaatcttgtatttttggcgctgtaattttag
|| ||||| ||||| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| |   ||   |||     | |   ||   |      ||    |  |  || || | || ||         |||| |         |||  || | || ||| | | |         
GAGCCTGTTCTTCCCGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtata---tatttttggctctttagctga---taaacagttgcaattctgttccaaccattgagac-------aatgattaa------caagtttatcttattgacacag---------

upper sequence: AT1G01050.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 6
GAACCTGTGCTTCCGGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaacctaaacttgatcaatgaaaagactctgttttttttttctcttactctaatcctttaggtcagtttaaatggtcttgtactccaatcttgtatttttggcgctgtaattttag
|| || || ||||| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| |  ||   ||||     | |   ||        ||    | |  |  || || | ||||   || |   ||    |||||   |||||  |||      |               
GAGCCAGTTCTTCCTGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattct---cttggctctttagctgataaaaaaattgaaattt--tgttccaaccatttaaa-caat---aacaagcttgt---ccaat--tgtgacacag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152033655|gb|BP561551.2|BP561551
EST:     GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
genomic: GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
EST: gi|125180360|gb|EL197398.1|EL197398
EST:     GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGA
genomic: GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGA
EST: gi|86084748|gb|DR380507.1|DR380507
EST:     GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
genomic: GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
EST: gi|164210201|gb|ES179229.1|ES179229
EST:     GCCATTGGATTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGAGTCATTGCAGTGTGTGTTGATGATCCT
genomic: GCCATTGGATTAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGA-TCATTGCAGTGTGTGTTGATGATCCT
EST: gi|164038778|gb|ES113165.1|ES113165
EST:     GCCAGAGCCATTGGATTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTGTGTGT
genomic: GCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGT
EST: gi|125040845|gb|EL113114.1|EL113114
EST:     TAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
genomic: TAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
EST: gi|47828474|gb|CK118158.1|CK118158
EST:     GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
genomic: GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
EST: gi|124961084|gb|EL035678.1|EL035678
EST:     AATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
genomic: AATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
EST: gi|86078040|gb|DR373797.1|DR373797
EST:     GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
genomic: GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
EST: gi|125112057|gb|EL163299.1|EL163299
EST:     ATTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
genomic: ATTAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCCTGAATAT
EST: gi|164217779|gb|ES089629.1|ES089629
EST:     CGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCC
genomic: CGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTGATGATCC
EST: gi|125166735|gb|EL192394.1|EL192394
EST:     GTTGTTTTCTGCGTGTCAGAGCCATTGGATTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTG
genomic: GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAAGATGACAAGATCATTGCAGTGTGTGTTG
EST: gi|124986488|gb|EL059006.1|EL059006
EST:     GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAG                         GGTGAAAAAAGATGACAAGATCATTGCAGTGTGTGTTG
genomic: GTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaaccta ... gtaattttagGGTGAAAAA-GATGACAAGATCATTGCAGTGTGTGTTG