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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATCTACTAGAATGCTTTCTATTGATTGTGAGATGGTTACCTGTGAAGATGGGAGCCAGGCTTTAGTTAGAGTTGGCGCTGTGGACCGTGACTTAAAGgtctgtagctctagaccattcaatctgatgttcatctgtgatcgggcattgtaaccatgttgtttttatctgatgttcttcaattag

Basic information

species Arabidopsis thaliana
transcript AT5G67240.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G67240.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0129g01120.t01 (Vitis vinifera), 5'ss of exon 5
TAAATCTACTAGAATGCTTTCTATTGATTGTGAGATGGTTACCTGTGAAGATGGGAGCCAGGCTTTAGTTAGAGTTGGCGCTGTGGACCGTGACTTAAAGgtc----tgtagctct--agaccattcaatctg-atgttcatctgtgatcgggcattgtaaccatgttgtttttatctgatgttcttcaattag----------------------
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AAGATCAAATGCAATGCTTGCTGTTGATTGTGAGATGGTTCTCTGTGAAGATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAGgtactaatggaactttttaaaccttatatgctatataagcatcttttctcccattacattacca-accttctctaagagaaggtcttgaatatcactttggaatattgtctttcag