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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGTTTATGCACAAATCCTATTTGGCTTGTCAAAACAAGGTTACAGCTTCAGACACCTCTTCATCAAACTCAACCATACTCAGGGCTATTAGgtttgcaatatgctgcacacacaaaattcagttttcattgtttctagtgtttcattctaaatgtgtattttgtgatcttaag

Basic information

species Arabidopsis thaliana
transcript AT5G66380.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66380.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv04s0023g02600.t01 (Vitis vinifera), 5'ss of exon 5
GTCTGTTTATGCACAAATCCTATTTGGCTTGTCAAAACAAGGTTACAGCTTCAGACACCTCTTCATCAAACTCAACCATACTCAGGGCTATTAGgtttgca--atatgctgcac--acacaaaattcagttttcattgtttctagtgtttcatt---ctaaatgtgtattttgtgatcttaag-----------
|| | ||| ||||| |||||||||||| || | ||||||||| | |||||| |||| |||||||||||||| | ||||||||| ||||| |  ||| |||   | ||  | ||   ||     | |||| | |   | || ||||||  |||||    |       || | || ||  | ||            
GTTTCTTTGTGCACTAATCCTATTTGGGTTATAAAAACAAGGCTGCAGCTTGAGACTCCTCTTCATCAAACCCGACCATACTCTGGGCTTTATGgtctgctccacatcttacattaacttgctaatcagatatgcattttcctagtgagtcattaactttggctcctagtatgagaagtcaaatcaagatcaat